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author greg
date Wed, 06 Jul 2016 10:25:06 -0400
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39 <hr> 39 <hr>
40 <center><big><b><a name="database_and_motifs">DATABASE AND MOTIFS</a></b></big></center> 40 <center><big><b><a name="database_and_motifs">DATABASE AND MOTIFS</a></b></big></center>
41 <hr> 41 <hr>
42 <div style="padding-left: 0.75in; line-height: 1em; font-family: monospace;"> 42 <div style="padding-left: 0.75in; line-height: 1em; font-family: monospace;">
43 <p> 43 <p>
44 DATABASE /Users/gvk/work/git_workspace/galaxy/database/files/002/dataset_2541.dat
45 <br /> 44 <br />
46 Database contains 1 sequences, 5386 residues 45 Database contains 1 sequences, 5386 residues
47 </p> 46 </p>
48 <p> 47 <p>
49 MOTIFS /Users/gvk/work/git_workspace/galaxy/database/files/002/dataset_2540.dat (Protein)
50 <table> 48 <table>
51 <thead> 49 <thead>
52 <tr> 50 <tr>
53 <th style="border-bottom: 1px dashed;">MOTIF</th> 51 <th style="border-bottom: 1px dashed;">MOTIF</th>
54 <th style="border-bottom: 1px dashed; padding-left: 1em;">WIDTH</th> 52 <th style="border-bottom: 1px dashed; padding-left: 1em;">WIDTH</th>
96 <li> 94 <li>
97 The p-value of a motif occurrence is defined as the 95 The p-value of a motif occurrence is defined as the
98 probability of a random sequence of the same length as the motif 96 probability of a random sequence of the same length as the motif
99 matching that position of the sequence with as good or better a score. 97 matching that position of the sequence with as good or better a score.
100 </li> 98 </li>
99 <li>
100 The score for the match of a position in a sequence to a motif