Mercurial > repos > greg > meme_fimo

comparison test-data/meme_output_html_1.html @ 6:4df8e9f58a53 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author greg
date Wed, 06 Jul 2016 10:25:06 -0400
parents
children
comparison
equal deleted inserted replaced
5:e85346ab5054 6:4df8e9f58a53
1 <!DOCTYPE HTML>
2 <html>
3 <head>
4 <meta charset="UTF-8">
5 <title>MEME</title>
6 <script>
7 // @JSON_VAR data
8 var data = {
9 "program": "MEME",
10 "version": "4.11.0",
11 "release": "Thu Nov 26 17:48:49 2015 +1000",
12 "stop_reason": "Stopped because requested number of motifs (1) found.",
13 "cmd": [
14 "meme",
15 "-nostatus"
16 ],
17 "options": {
18 "mod": "zoops",
19 "revcomp": false,
20 "nmotifs": 1,
21 "minw": 8,
22 "maxw": 50,
23 "minsites": 2,
24 "maxsites": 30,
25 "wnsites": 0.8,
26 "spmap": "pam",
27 "spfuzz": 120,
28 "maxwords": -1,
29 "prior": "megap",
30 "b": 7500,
31 "maxiter": 50,
32 "distance": 1e-05,
33 "wg": 11,
34 "ws": 1,
35 "noendgaps": false,
36 "substring": true
37 },
38 "alphabet": {
39 "name": "Protein",
40 "like": "protein",
41 "ncore": 20,
42 "symbols": [
43 {
44 "symbol": "A",
45 "name": "Alanine",
46 "colour": "0000CC"
47 }, {
48 "symbol": "C",
49 "name": "Cysteine",
50 "colour": "0000CC"
51 }, {
52 "symbol": "D",
53 "name": "Aspartic acid",
54 "colour": "FF00FF"
55 }, {
56 "symbol": "E",
57 "name": "Glutamic acid",
58 "colour": "FF00FF"
59 }, {
60 "symbol": "F",
61 "name": "Phenylalanine",
62 "colour": "0000CC"
63 }, {
64 "symbol": "G",
65 "name": "Glycine",
66 "colour": "FFB300"
67 }, {
68 "symbol": "H",
69 "name": "Histidine",
70 "colour": "FFCCCC"
71 }, {
72 "symbol": "I",
73 "name": "Isoleucine",
74 "colour": "0000CC"
75 }, {
76 "symbol": "K",
77 "name": "Lysine",
78 "colour": "CC0000"
79 }, {
80 "symbol": "L",
81 "name": "Leucine",
82 "colour": "0000CC"
83 }, {
84 "symbol": "M",
85 "name": "Methionine",
86 "colour": "0000CC"
87 }, {
88 "symbol": "N",
89 "name": "Asparagine",
90 "colour": "008000"
91 }, {
92 "symbol": "P",
93 "name": "Proline",
94 "colour": "FFFF00"
95 }, {
96 "symbol": "Q",
97 "name": "Glutamine",