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comparison test-data/fimo_output_xml_2.xml @ 6:4df8e9f58a53 draft default tip

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author greg
date Wed, 06 Jul 2016 10:25:06 -0400
parents 09098f34f445
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5:e85346ab5054 6:4df8e9f58a53
2 <!-- Begin document body --> 2 <!-- Begin document body -->
3 <fimo version="4.11.0" release="Thu Nov 26 17:48:49 2015 +1000"> 3 <fimo version="4.11.0" release="Thu Nov 26 17:48:49 2015 +1000">
4 xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" 4 xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
5 xsi:schemaLocation= xmlns:fimo="http://noble.gs.washington.edu/schema/fimo" 5 xsi:schemaLocation= xmlns:fimo="http://noble.gs.washington.edu/schema/fimo"
6 > 6 >
7 <command-line>fimo --alpha 1.000000 --max-stored-scores 100000 --motif-pseudo 0.100000 --no-qvalue --thresh 0.000100 --o /Users/gvk/work/git_workspace/galaxy/database/job_working_directory/001/1978/dataset_2738_files --verbosity 1 /Users/gvk/work/git_workspace/galaxy/database/files/002/dataset_2540.dat /Users/gvk/work/git_workspace/galaxy/database/files/002/dataset_2541.dat</command-line>
8 <settings> 7 <settings>
9 <setting name="output directory">/Users/gvk/work/git_workspace/galaxy/database/job_working_directory/001/1978/dataset_2738_files</setting>
10 <setting name="MEME file name">/Users/gvk/work/git_workspace/galaxy/database/files/002/dataset_2540.dat</setting>
11 <setting name="sequence file name">/Users/gvk/work/git_workspace/galaxy/database/files/002/dataset_2541.dat</setting>
12 <setting name="allow clobber">false</setting> 8 <setting name="allow clobber">false</setting>
13 <setting name="compute q-values">false</setting> 9 <setting name="compute q-values">false</setting>
14 <setting name="parse genomic coord.">false</setting>
15 <setting name="text only">false</setting> 10 <setting name="text only">false</setting>
16 <setting name="scan both strands">false</setting> 11 <setting name="scan both strands">false</setting>
17 <setting name="output threshold">0.0001</setting> 12 <setting name="output threshold">0.0001</setting>
18 <setting name="threshold type">p-value</setting> 13 <setting name="threshold type">p-value</setting>
19 <setting name="max stored scores">100000</setting> 14 <setting name="max stored scores">100000</setting>