Mercurial > repos > greg > linear_fascile_evaluation
view linear_fascile_evaluation.xml @ 11:e92da88ff396 draft
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author | greg |
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date | Thu, 30 Nov 2017 11:29:43 -0500 |
parents | 6ad10978f14d |
children | 4002404a3217 |
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<tool id="linear_fascile_evaluation" name="Linear fascicle evaluation" version="0.13.0"> <description>(LiFE) for tractography results</description> <requirements> <requirement type="package" version="0.13.0">dipy</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ python '$__tool_directory__/linear_fascile_evaluation.py' --input_nifti1 '$input_nifti1' --input_nifti1_files_path $'input_nifti1.files_path' --input_nifti2'$input_nifti2' --input_nifti2_files_path $'input_nifti2.files_path' --input_trackvis '$input_trackvis' --output_life_candidates '$output_life_candidates' &>/dev/null ]]></command> <inputs> <param name="input_nifti1" format="nifti1" type="data" label="dRMI dataset"/> <param name="input_nifti2" format="nifti1" type="data" label="dRMI dataset and label map"/> <param name="input_trackvis" format="trackvis" type="data" label="Track Visualization Header"/> </inputs> <outputs> <data name="output_life_candidates" format="png" label="${tool.name}: LiFE Candidates" /> </outputs> <tests> <test> </test> </tests> <help> **What it does** Uses a forward model that predicts the signal from each of a set of streamlines, and fits a linear model to these simultaneous predictions for evaluation of tractography results. ----- **Options** </help> <citations> </citations> </tool>