Mercurial > repos > greg > linear_fascile_evaluation
view linear_fascile_evaluation.xml @ 1:84a2e30b5404 draft
Uploaded
author | greg |
---|---|
date | Tue, 28 Nov 2017 13:30:57 -0500 |
parents | cbfa8c336751 |
children | 5daa2541c7fa |
line wrap: on
line source
<tool id="linear_fascile_evaluation" name="Linear fascicle evaluation" version="0.13.0"> <description>(LiFE) for tractography results</description> <requirements> <requirement type="package" version="0.13.0">dipy</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ python '$__tool_directory__/linear_fascile_evaluation.py' --candidates '$candidates' --output_life_candidates '$output_life_candidates' --output_life_optimized '$output_life_optimized' --output_error_histograms '$output_error_histograms' --output_beta_histogram '$output_beta_histogram' --output_spatial_errors 'output_spatial_errors' ]]></command> <inputs> <param name="candidates" type="select" label="Candidates"> <option value="lr-superiorfrontal.trk" selected="true">lr-superiorfrontal.trk</option> </param> </inputs> <outputs> <data name="output_spatial_errors" format="png" label="${tool.name}: Spatial Errors" /> <data name="output_beta_histogram" format="png" label="${tool.name}: Beta Histogram" /> <data name="output_error_histograms" format="png" label="${tool.name}: Error Histograms" /> <data name="output_life_optimized" format="png" label="${tool.name}: LiFE Optimized Streamlines" /> <data name="output_life_candidates" format="png" label="${tool.name}: LiFE Candidates" /> </outputs> <tests> <test> </test> </tests> <help> **What it does** Uses a forward model that predicts the signal from each of a set of streamlines, and fits a linear model to these simultaneous predictions for evaluation of tractography results. ----- **Options** </help> <citations> </citations> </tool>