Mercurial > repos > greg > ks_distribution

changeset 5:145871acd103 draft

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Uploaded
author greg
date Wed, 31 May 2017 07:55:42 -0400
parents a91bd45aa8b1
children 9831319a19fb
files ks_distribution.xml
diffstat 1 files changed, 5 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/ks_distribution.xml	Wed May 31 07:55:32 2017 -0400
+++ b/ks_distribution.xml	Wed May 31 07:55:42 2017 -0400
@@ -1,5 +1,5 @@
 <tool id="ks_distribution" name="KsDistribution" version="1.0.0">
-    <description>plots the distribution of synonymous substitution (Ks) rates and fits significant componets(s)</description>
+    <description>plots the distribution of synonymous substitution (Ks) rates and fits significant component(s)</description>
     <macros>
         <import>macros.xml</import>
     </macros>
@@ -7,12 +7,13 @@
     <command detect_errors="exit_code">
         <![CDATA[
             Rscript $__tool_directory__/ks_distribution.R
-            -k '${kaks}'
-            -c '${components}'
+            -k '$input'
+            -c '$components'
             -o '$output'
         ]]>
     </command>
     <inputs>
+        <param name="input" format="tabular" type="data" label="KaKsAnalysis tabular file" />
         <param name="rates" format="tabular" type="data" label="Synonymous substitution rates" />
         <param name="components" format="tabular" type="data" label="Significant components" />
     </inputs>
@@ -21,6 +22,7 @@
     </outputs>
     <tests>
         <test>
+            <param name="input" value="kaks_input1.tabular" ftype="tabular" />
             <param name="rates" value="rates.tabular" ftype="tabular" />
             <param name="components" value="components.tabular" ftype="tabular" />
             <output name="output" file="output.pdf" ftype="pdf" compare="contains" />