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comparison ks_distribution.xml @ 38:68447763ccc2 draft

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Uploaded
author greg
date Mon, 26 Jun 2017 11:22:29 -0400
parents 96e1400d3125
children 15478b43d94d
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37:ee4ebdf2935e 38:68447763ccc2
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements_ks_distribution" /> 6 <expand macro="requirements_ks_distribution" />
7 <command detect_errors="exit_code"><![CDATA[ 7 <command detect_errors="exit_code"><![CDATA[
8 #import json
9 Rscript $__tool_directory__/ks_distribution.R 8 Rscript $__tool_directory__/ks_distribution.R
10 -k '$input' 9 -k '$input'
11 -c '$components' 10 -c '$components'
12 -n $components.metadata.number_comp 11 -n $components.metadata.number_comp
13 -o '$output' 12 -o '$output'
14 #if str($choose_colors_cond.choose_colors) == 'yes': 13 #if str($choose_colors_cond.choose_colors) == 'yes':
15 #set specified_colors = list() 14 #set specified_colors = list()
16 #for $selection in $choose_colors_cond.colors: 15 #for $selection in $choose_colors_cond.colors:
17 $specified_colors.append(str($selection.color)) 16 $specified_colors.append(str($selection.color))
18 #end for 17 #end for
19 -r '#echo json.dumps(specified_colors)#' 18 #set specified_colors = ",".join($specified_colors)
19 -r '$specified_colors)'
20 #end if 20 #end if
21 ]]></command> 21 ]]></command>
22 <inputs> 22 <inputs>
23 <param name="input" format="tabular" type="data" label="KaKsAnalysis tabular file" /> 23 <param name="input" format="tabular" type="data" label="KaKsAnalysis tabular file" />
24 <param name="components" format="ptkscmp" type="data" label="Significant components" /> 24 <param name="components" format="ptkscmp" type="data" label="Significant components" />