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comparison ks_distribution.xml @ 19:14f771140d45 draft

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Uploaded
author greg
date Fri, 23 Jun 2017 15:00:34 -0400
parents 133668490614
children f3b7455d6c04
comparison
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18:828b43bcf2ac 19:14f771140d45
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements_ks_distribution" /> 6 <expand macro="requirements_ks_distribution" />
7 <command detect_errors="exit_code"><![CDATA[ 7 <command detect_errors="exit_code"><![CDATA[
8 #import json
9 Rscript $__tool_directory__/ks_distribution.R 8 Rscript $__tool_directory__/ks_distribution.R
10 -k '$input' 9 -k '$input'
11 -c '$components' 10 -c '$components'
12 -n $components.metadata.num_comp 11 -n $components.metadata.num_comp
13 -o '$output' 12 -o '$output'
14 #if str($choose_colors_cond.choose_colors) == 'yes': 13 #if str($choose_colors_cond.choose_colors) == 'yes':
15 #set ccs = list() 14 #set ccs = list()
16 #for $i in $choose_colors_cond.colors: 15 #for $i in $choose_colors_cond.colors:
17 $ccs.append(str($i.color)) 16 $ccs.append(str($i.color))
18 #end for 17 #end for
19 -r '#echo json.dumps(ccs)#' 18 -r str($ccs)
20 #else:
21 -r ''
22 #end if 19 #end if
23 ]]></command> 20 ]]></command>
24 <inputs> 21 <inputs>
25 <param name="input" format="tabular" type="data" label="KaKsAnalysis tabular file" /> 22 <param name="input" format="tabular" type="data" label="KaKsAnalysis tabular file" />
26 <param name="components" format="ptkscmp" type="data" label="Significant components" /> 23 <param name="components" format="ptkscmp" type="data" label="Significant components" />