Mercurial > repos > greg > ks_distribution

comparison ks_distribution.xml @ 5:145871acd103 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author greg
date Wed, 31 May 2017 07:55:42 -0400
parents 98f6ce0adb1b
children 9831319a19fb
comparison
equal deleted inserted replaced
4:a91bd45aa8b1 5:145871acd103
1 <tool id="ks_distribution" name="KsDistribution" version="1.0.0"> 1 <tool id="ks_distribution" name="KsDistribution" version="1.0.0">
2 <description>plots the distribution of synonymous substitution (Ks) rates and fits significant componets(s)</description> 2 <description>plots the distribution of synonymous substitution (Ks) rates and fits significant component(s)</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements_ks_distribution" /> 6 <expand macro="requirements_ks_distribution" />
7 <command detect_errors="exit_code"> 7 <command detect_errors="exit_code">
8 <![CDATA[ 8 <![CDATA[
9 Rscript $__tool_directory__/ks_distribution.R 9 Rscript $__tool_directory__/ks_distribution.R
10 -k '${kaks}' 10 -k '$input'
11 -c '${components}' 11 -c '$components'
12 -o '$output' 12 -o '$output'
13 ]]> 13 ]]>
14 </command> 14 </command>
15 <inputs> 15 <inputs>
16 <param name="input" format="tabular" type="data" label="KaKsAnalysis tabular file" />
16 <param name="rates" format="tabular" type="data" label="Synonymous substitution rates" /> 17 <param name="rates" format="tabular" type="data" label="Synonymous substitution rates" />
17 <param name="components" format="tabular" type="data" label="Significant components" /> 18 <param name="components" format="tabular" type="data" label="Significant components" />
18 </inputs> 19 </inputs>
19 <outputs> 20 <outputs>
20 <data name="output" format="pdf"/> 21 <data name="output" format="pdf"/>
21 </outputs> 22 </outputs>
22 <tests> 23 <tests>
23 <test> 24 <test>
25 <param name="input" value="kaks_input1.tabular" ftype="tabular" />
24 <param name="rates" value="rates.tabular" ftype="tabular" /> 26 <param name="rates" value="rates.tabular" ftype="tabular" />
25 <param name="components" value="components.tabular" ftype="tabular" /> 27 <param name="components" value="components.tabular" ftype="tabular" />
26 <output name="output" file="output.pdf" ftype="pdf" compare="contains" /> 28 <output name="output" file="output.pdf" ftype="pdf" compare="contains" />
27 </test> 29 </test>
28 </tests> 30 </tests>