# HG changeset patch
# User greg
# Date 1488394712 18000
# Node ID 5dc3d20ff59829bf1c96599a96b1c0d7951962ce
# Parent  dab0ce7e128a5859cbc4dabb4178e8ca9fcd646e
Uploaded

diff -r dab0ce7e128a -r 5dc3d20ff598 kaks_analysis.xml
--- a/kaks_analysis.xml	Wed Mar 01 13:54:29 2017 -0500
+++ b/kaks_analysis.xml	Wed Mar 01 13:58:32 2017 -0500
@@ -51,10 +51,9 @@
             >/dev/null
             && mv $output_dir/species1.fna '$output_species1_fna'
             && mv $output_dir/species1.faa '$output_species1_faa'
-            #if str($comparison) == 'orthologs':
+            #if str($comparison) == 'paralogs':
                 && mv $output_dir/species1.fna.blastn.paralogs '$output_species1_paralog'
-            #end if
-            #if str($comparison) == 'orthologs':
+            #else:
                 && mv $output_dir/species2.faa '$output_species2_faa'
                 && mv $output_dir/species2.fna '$output_species2_fna'
                 && mv $output_dir/species1.fna.blastn.orthologs '$output_species1_ortholog'