Mercurial > repos > greg > kaks_analysis

diff test-data/species1.fna @ 0:ef6cd36613a8 draft

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author greg
date Wed, 01 Mar 2017 10:29:54 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/species1.fna	Wed Mar 01 10:29:54 2017 -0500
@@ -0,0 +1,16 @@
+>species1_11
+ATGGGTGTGAGTATGGGGCAAGGAAACCCAATGGGTATGCACTTGTTGCCATCTGGCAGCTCAAGTCCGCGCACCTCGCCTTCCCTCCGCGACCCGCCCCTCTCCCTCCCCGTCCTTCCCAACTCCGACCTCTCCGTGTCCCTCCCCGACCTGCATAAGCTTCGCCGCAATGAGCCCGTCACTTCGGGCATCCTCCACGTCCGCGACCTCTCATTCCTCCGCCCCCGCAGCCACAACGGGGATGATGATGAGGAGACCGAGGAGATGACCCGTGAGCAGGAGGAGAAGTACTTGCAGTGGAGGAGCTCCCTGGTCGAGAAGCTGGCCGGGATCGAGCTCAACCTCGAGAGGGTTAAGTTTCGGATGAGCGTCGAAATCCCGCCCTCCGATGACTTCAGGGCAATGAAGAAGTCTTGGGAGAATTTCTACGCCTCCGAGCTCCTCAGTAGCAGGAATCCTGTGAGGAAGATAGCGAAAAGGCCAGACACAATTCTTGTCCGTGGTGTGCCATCCAGGTGGTTTGCGGAGACGAGGATATCATCGAAAGCCTCCACACTGGTCACACACACTATCATCGAAAGCTGC
+>species1_12
+ATGTCCGCCGCCGCCGCCGCCCTCCGGCCGACCGAGCCGCTCCCCCTCCCGAGCGGCCTCTCCCTCGCGCCGCGCCTCAAGCTGCTCCTCACCTTCTTCCGCGCCGACCTCTCCGTCCGCCCCGTCGACGAGTGGCAGCTCAAGACCGCGCTCCTCGCCTTCCTCCGCGACCCGCCCCTCTCCCTCCCCGTCCTCCCCGACTCCGACCTCTCCGTGCGCACCCTCCCCGACCTGCATAAGCGCCGCCGCGACGAGCCCGTCGCCTCGGGCGTCCTCCACGTCCGCGACCTCTCCTTCCTCCGCCCACGCCGCCGCAACGGGGATGATGAGGAGGAGGAGGCCGAGGAGATGACCCGTGAGCAGGAGGAGGAGAAGTACTTCCAGTGGAGGAGCTCCCTGGTCGAGAAGCTGGCCGGGATCGAGCTCAACCTCGAGGGGGTTAAGTTTCGGATGAGCGTCGAGATCCCGCCCTCCGATGACTTCAGGGCAATGAAGAAGTCTTGGGAGAATTTCTACGCCTCCGAGCTCCTCAGTAGCAGGAATCCTGTGAGGAAGATAGCGAAAAGGCCAGACACCATTCTTGTCCGGGGTGTGCCATCCAGGTGGTTTGCGGAGACGAGGATATCATCGAAAGCCTCCACGCTGGTCACACACACTATTTTCTCGGCACTTGGTAAAATAAGGAACCTTAATATTTCTAGTGATGATGAATGGGGAGCAAAACAAGACGGAACCAATAAGGAGATTATATCTGGACTAAATTGCAAAGTGTGGGTGCAATTTGAGAACTACGACGATTTCAACAGTGCAATGCAGGCATTATGTGGACGTTCATTAGAAAAAGAAGGATCACGGTTGAAGGTAGACTATGAAGTAACTTGGGATCATGAAGGTTTCTTCCGCAATGCACAATACGAGCCTGTTCGCAGCAATTTAGAAGAGAGAAATTCATCGGCTCATGGAAGGAAGAAACATTACACATCGCGAATTGAGTCAGATCATAGAAAGAGATTTAGGGAT
+>species1_15
+ATGAAAGATGGCCTTTCTCTCTCCTTCGCTCTCATCAGCTCGAGCCCCGACAGCAAGTGTGAGCTACTGAACTCGAGACCCTCCTGTCGCGCGGCGCGGCGCGGCGAGAGTGGCCTTTTGATCCGACGAAGCTATCTAAGACCCTGCCAATGTCCATTTGGAGATAGGATGTCGGAACAGCAGGATAGTACTAGTAAAAGCTCTAGCTCAAGCATCAGCAGCAGTACACAGGAGAGCGAGGAGGAGGTATCTATAACAATAGGTAGCCTCCTCGCCCAAGCAAAGAACAACAGTGGGCATAGTCTTGGAAGGCGCCTCTCTCAATTGGGTTCAATCCCGCACACTCCTCGAGTTAATGGAAAAATCCCTAATCTTGATAATGCAACTTTGGATCATGAAAGATTGTCGGAAAGGTTGGGAAATTATGGTTTGGCCGAGTTTCAAATAGAGGGTGATGGAAATTGTCAGTTCCGAGCTTTGGCAGACCAGATATTTCGCAACCCCGATTATCACAAACATGTGAGAAAGTTAGTCATGAAACAGCTAAAGGAATTCAGAAAACAGTATGAAAGCTATGTACCTATGGAATATAAAGTCTACTTGAAGAAAATGAAAAGATCTGGGGAATGGGGGGATCATCTGACTTTACAAGCAGCTGCAGACAGGTTTGGTGCCAAAATTTGTTTGCTGACGTCATTCAGAGACACCTGCCTAATTGAGATAGTCCCCAGGGATGTGACTCCCACAAGGGAGTTGTGGCTAAGCTTCTGGTGTGAAGTGCACTACAATTCCTTGTACGCAACTGACGATCTCCTAACCCGCAAAACCAAGAAGAAGCATTGGTTGTTC
+>species1_16
+ATGTCTGAACAACAGGATCATGCTAGCAAAAGTTCTTGCTCAAGTCTTAGCACCAGTACTCAGGAGAGTGAGGAGGATGTGACAGTTGGTACCCTTTTAACTGAAGCAAAGAACAGTGGACGGAGTCTTGGAAAACGCCTTTCCCACTTAGATTCTATCCCGCACACTCCTCGAGTTAATGGGCAAATTCCTGATGTTAATAATGCAACAATAGACCATGAAACATTACTGGAAAGATTGGGCACTTATGGCTTAGCTGAATTCCAAATTGAAGGAGACGGAAATTGTCAGTTCCGAGCTTTGGCAGATCAGATATTCCGCAATCCTGACTATCACAAACATGTGAGGAAGTCAGTCGTGAAGCAGCTAAAGGAATTCAGGAAACACTATGAAGGCTATGTACCGATGGAATATAAGGTGTACTTGAAGAAAATGAAAAGATCTGGAGAATGGGGAGATCATGTGACCTTACAAGCGGCTGCAGACCGGTTTGCTGCCAAGATTTGCCTGCTGACATCATTTAGAGACACATGCCTAATCGAGATAGTCCCCAGAGGTGCCACTCCCACAAAAGAGCTTTGGTTAAGCTTCTGGAGTGAGGTGCACTACAATTCCTTGTATGCAACTGAAGATCTTCCAAATCGCAAGACCAGAAAGAAGCACTGGCTGTTC
+>species1_21
+ATGGCCGGCGCCGGCGCCGGCGAGAGCCTGGACCTCCCCGTGGTGGACCTAGCGTCCTCCGACCTCGCCGCCGCCGCCAAATCCGTCCGAAAGGCTTGCGTGGAGTACGGATTCTTCTACGTGGTCAACCATGGAGCCGAGGGATTGGCGGAGAAGGTGTTCGGGGAGAGCAGCAAGTTTTTCGAGCAGCCGCTGGGGGAGAAGATGGCGCTGCTGAGGAACAGAAACTACCTGGGGTACACCCCGCTTGGCGCCGATAAGCTCGACGCCTCGTCCAAATTCAAAGGAGATCTCAATGAAAATTACTGTATCGGACCTATCAGAAAAGAAGGTTATCAGAATGATGCTAACCAATGGCCTTCTGAAGAGAATTTCCCATGTTGGAAGGAGACAATGAAGCTATACCATGAAACTGCACTTGCTACTGGTAAAAGGATACTCTCTCTAATTGCTCTGAGTTTGAATCTCGACGTTGAATTCTTTGACTGCCCAGTGGCCTTTCTTCGGTTATTGCACTACCCAGGTGAAGCTAACGAGTCCGATGATGGCAATTATGGTGCATCAGCTCACTCAGACTATGGAGTACTAACACTTGTAGCAACAGATGGCACTCCTGGGCTGCAGATATGCAGGGAGAAGGATAGGTGCCCCCAGCTTTGGGAAGACGTTCATCACATTGAAGGGGCCCTGATTGTTAATATCGGCGATTTGCTACAAAGGTGGACTAATTGTGTTTTCAGGTCTACACTGCATCGCGTTGTTGCAGTTGGTAAAGAGCGATACTCTGTGGCTTTCTTTCTTCACACAAACCCTGATTTAGTGGTTCAATGCTTGGAAAGCTGCTGCAGTGAGGCATGCCCACCGAGGTTCCCACCTATAAGGAGCGGCGACTATTTGGAAGACCGATTGAGGGCTAGATACAAA
+>species1_22
+ATGTGGGGCCCACATATCATCCTCTATCTCCAACCCTTCTTCCTCCTCCCTTCCTCTCACATGAGCTGCGTCCTCGGCCGCCCCTCCGCCCCCTCCCTCGACCACCCCCAGCAGCCCAACCCCCCGCCCGTCGCCCCGGAGAAGCCGCCCGCCGTCGCCAAGAAGGCGGCCGAGGAGGAGGAGGAGAAGAAGCCGCCGAAGCAGGCTAGGAGGGAGAGGCACGCATGGTCGTCGCGGTCTGCCGCCGCCGAGGCGGTCGGCCTGGGGCTCGGGGGGAGCTTCGCCAACAGGGCGCGCGGGGAGCAGGTGGCGGCCGGCTGGCCCGCCTGGCTCTCCGCCGTCGTCGGCGAGGCCATCGACGGCTGGACCCTGCGCCGCGCCGACTCCTTCGAGAAGATCGACAAGGTACGTACTCCTGCCCTCGCGCTCGCCATTGTTGGTGGTGGGGGAAGGGAACTGAGCTCATCGGTCTTGTCGGTGGCGCAGATCGGGCAGGGGACGTACATCAACGTGTACAAGGCGCGGGACACGGTGACGGGCAAGATCGTGGCGCTCAAGAAGATGGGCCAAGTTTGCTTCCTTCTCTGTAAGCCCAGTTACCGTGGGGATACAGCCGCCGGCGGACGCGGAGGGCGGCGGCGGCAGCAGCAGCAAACCGCCGCTTTGGCAGAAGAGGAATCCGGGATGGCCGGCGGCGGCGGCGGCGGGAATCGCCTGGACCTCCCCGTGGTGGACCTCGCGTCCTCCGACCCCCGAGCCGCCGCCGAGTCCATCCGAAAGGCGTGCGTGGAGTCCGGATTCTTCTACGTGGTCAACCATGGGGTGGAGGAGGGATTGCTGAAGAGGTTGTTCGCGGAGAGCTCGAAGTTCTTCGAGCTGCCGATGGAGGAGAAGATAGCGCTGCGGAGGAACAGCAACCACCGGGGATACACCCCGCCCTACGCCGAGAAGCTCGATCCCTCGTCCAAATTCGAAGGAGACCTCAAGGAAAGTTTCTATATTGGGCCTATTGGAGATGAAGGTTTGCAGAATGATGCTAACCAGTGGCCTTCTGAAGAGCGCTTACCAAGTCGGAGGGAGACAATTAAGATGTACCATGCAAGTGCACTGTCTACTGGCAAAAGGATACTCTCTCTAATCGCTCTGAGTTTGAATCTTGACGCTGAATTCTTTGAGAACATTGGTGCCTTCAGCTGCCCATCAGCATTTCTTCGATTATTGCACTACCCAGGTGAAGTAGACGACTCTGATGATGGCAATTATGGTGCATCAGCTCACTCTGATTATGGAATGATAACCCTCCTAGCAACAGACGGCACTCCTGGGCTACAGATATGCAGGGAAAAGAATAGGAATCCCCAGCTCTGGGAAGATGTTCATCACATTGATGGGGCCCTGATTGTTAACATTGGCGATTTGCTAGAAAGGTGGACGAATTGTATTTACAGGTCTACAGTGCACCGTGTTGTTGCAGTTGGTAAAGAGCGATATTCTGCGGCTTTTTTTCTTGACCCAAACCCTGATTTAGTGGTTCAGTGTTTGGAAAGCTGTTGCAGCGAGTCATGCCCACCGAGGTTCTCACCTATAAAGAGTGGCGACTATTTGAAAGAGCGATTGAGCGCTACATACAAA
+>species1_35
+ATGGCGGCGGCCACCACGTCGCGGCGCGGCCCGGGCGCCATGGACGACGAGAACCTCACCTTCGAGACCTCCCCGGGGGTCGAGGTCATCAGCAGCTTCGACCAGATGGGGATCCGCGACGACCTCCTCCGCGGCATCTACGCCTACGGCTTCGAGAAGCCCTCCGCCATCCAGCAGCGCGCCGTCCTCCCCATCATCAGCGGCCGCGACGTCATCGCCCAGGCCCAGTCCGGGACCGGCAAGACCTCCATGATCTCGCTCTCCGTCTGCCAGATCGTAGACACCGCCGTCCGTGAGGTGCAGGCTTTAATACTGTCACCAACTAGAGAACTTGCTGCACAAACAGAAAGAGTTATGCTGGCTATCGGTGACTTCATCAATATCCAAGTGCATGCTTGTATTGGTGGCAAAAGTATTGGTGAGGATATTAGAAAGCTTGAGCACGGAGTGCATGTGGTGTCAGGAACACCTGGCAGAGTCTGTGATATGATCAAGAGAAGGACCTTGCGTACAAGAGCCATTAAGCTCCTAATTCTGGATGAAGCTGATGAGATGTTGGGCAGAGGCTTTAAGGATCAGATATATGATGTGTACAGATACCTCCCTCCAGAACTCCAGGTTTGCTTGATCTCCGCAACTCTGCCTCACGAGATCTTGGAAATGACCAGCAAGTTCATGACTGATCCAGTTCGGATCCTTGTGAAGCGTGATGAATTGACTCTAGAGGGCATCAAACAATTCTTTGTTGCTGTTGAGAAAGAAGAATGGAAGTTTGACACGCTTTGTGATCTTTATGATACACTGACAATCACCCAAGCTGTCATTTTCTGCAACACAAAGAGAAAGGTTGATTGGCTTACGGAAAGAATGCGCAGCAATAACTTCACAGTATCAGCTATGCATGGCGACATGCCTCAAAAGGAAAGGGATGCCATTATGGGTGAATTCAGGTCTGGTGCAACCCGTGTTCTAATCACGACAGATGTGTGGGCTCGAGGCCTCGATGTTCAGCAGGTCTCTCTTGTCATAAATTATGATCTCCCAAATAATCGTGAACTTTACATCCATCGCATTGGTCGCTCTGGACGTTTTGGTCGCAAGGGTGTGGCCATCAATTTTGTCAAAAAGGAAGACATCCGTATCCTGAGAGATATCGAGCAGTACTACAGCACGCAGATTGATGAAATGCCAATGAATGTTGCTGATCTAATT
+>species1_36
+ATGGCGGCGGCCACCACGTCCCGGCGCGGCCCCGGCGCCATGGACGACGAGAACCTCACCTTCGAGACCTCCCCCGGGGTCGAGGTCATCAGCAGCTTCGACCAGATGGGGATCCGCGAGGACCTCCTCCGCGGCATCTACGCCTACGGCTTCGAGAAGCCCTCCGCCATCCAGCAGCGCGCCGTCCTCCCCATCATCAGCGGCCGCGACGTCATCGCCCAGGCCCAGTCCGGAACCGGCAAGACCTCCATGATCTCGCTCTCCGTCTGCCAGATCGTCGACACCGCCGTCCGAGAGGTTCAGGCCTTGATACTCTCACCAACTAGAGAACTTGCTGCACAAACAGAAAGAGTTATGCTGGCCATTGGTGATTACATCAATATCCAAGTGCATGCTTGTATTGGTGGCAAAAGTATTGGTGAGGATATTAGAAAGCTTGAGCATGGAGTGCATGTTGTGTCAGGAACACCTGGCAGAGTCTGTGATATGATCAAGAGAAGGACCTTGCGTACAAGAGCCATTAAGCTCCTAATTCTGGATGAAGCCGATGAGATGTTGGGCAGAGGCTTTAAGGATCAGATATATGATGTCTACAGATATCTACCCCCAGAGCTCCAGGTTTGCTTGATCTCCGCAACTCTGCCACATGAGATCTTGGAAATGACCAGCAAGTTCATGACTGACCCAGTCCGGATCCTTGTAAAGCGTGATGAATTGACCCTAGAGGGCATCAAACAATTCTTTGTTGCTGTTGAGAAAGAAGAATGGAAGTTTGATACTCTTTGTGATCTTTATGATACACTGACAATCACCCAAGCTGTCATTTTCTGCAACACGAAGAGAAAGGTTGATTGGCTTACAGAAAGAATGCGCAGCAATAACTTCACGGTATCAGCTATGCATGGTGACATGCCTCAAAAGGAAAGGGATGCCATTATGGGTGAATTCAGGTCTGGTGCAACCCGTGTTCTAATTACGACAGATGTGTGGGCTCGAGGCCTGGATGTTCAGCAGGTCTCTCTTGTCATAAACTATGATCTTCCAAATAATCGTGAACTTTACATCCATCGCATTGGTCGCTCTGGACGTTTTGGTCGCAAGGGTGTGGCCATCAATTTTGTCAAAAAGGAAGACATCCGTATCCTGAGAGATATTGAGCAGTACTACAGCACACAGATTGATGAAATGCCAATGAATGTTGCTGATCTAATT