Mercurial > repos > greg > kaks_analysis
comparison kaks_analysis.xml @ 36:ff040a476523 draft
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| author | greg |
|---|---|
| date | Tue, 06 Jun 2017 08:58:21 -0400 |
| parents | 5c246135e07d |
| children | b7a3dce9c4f7 |
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| 35:5c246135e07d | 36:ff040a476523 |
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| 189 <filter>options_type['options_type_selector'] == 'advanced' and options_type['fit_components_cond']['fit_components'] == 'yes'</filter> | 189 <filter>options_type['options_type_selector'] == 'advanced' and options_type['fit_components_cond']['fit_components'] == 'yes'</filter> |
| 190 </data> | 190 </data> |
| 191 </outputs> | 191 </outputs> |
| 192 <tests> | 192 <tests> |
| 193 <test> | 193 <test> |
| 194 <param name="coding_sequences_species_1" value="species1_cds.fasta" ftype="fasta"/> | |
| 195 <param name="proteins_species_1" value="species1_pep.fasta" ftype="fasta"/> | |
| 196 <param name="non_commercial_use" value="yes"/> | |
| 197 <output name="output_species1_fna" file="species1_cds.fasta" ftype="fasta" compare="contains"/> | |
| 198 <output name="output_species1_faa" file="species1_pep.fasta" ftype="fasta" compare="contains"/> | |
| 199 <output name="output_species1_paralog" file="output_blastn_results1.tabular" ftype="tabular" compare="contains"/> | |
| 200 <output name="output_rbhb" file="output_paralogous_pairs.tabular" ftype="tabular"/> | |
| 201 <output name="output_kaks" file="output1.tabular" ftype="tabular"/> | |
| 194 </test> | 202 </test> |
| 195 </tests> | 203 </tests> |
| 196 <help> | 204 <help> |
| 197 This tool is one of the PlantTribes collection of automated modular analysis pipelines for comparative and evolutionary analyses | 205 This tool is one of the PlantTribes collection of automated modular analysis pipelines for comparative and evolutionary analyses |
| 198 of genome-scale gene families and transcriptomes. This tool estimates paralogous and orthologous pairwise synonymous (Ks) and | 206 of genome-scale gene families and transcriptomes. This tool estimates paralogous and orthologous pairwise synonymous (Ks) and |