Mercurial > repos > greg > kaks_analysis

comparison kaks_analysis.xml @ 6:ed921c8159bf draft

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author greg
date Wed, 01 Mar 2017 13:45:58 -0500
parents a0c58fecc07b
children cecea681ef40
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5:a0c58fecc07b 6:ed921c8159bf
18 #if str($options_type.options_type_selector) == 'advanced': 18 #if str($options_type.options_type_selector) == 'advanced':
19 #set codeml_ctl_file_cond = $options_type.codeml_ctl_file_cond 19 #set codeml_ctl_file_cond = $options_type.codeml_ctl_file_cond
20 #set codeml_ctl_file_select = $codeml_ctl_file_cond.codeml_ctl_file_select 20 #set codeml_ctl_file_select = $codeml_ctl_file_cond.codeml_ctl_file_select
21 #set fit_components_cond = $options_type.fit_components_cond 21 #set fit_components_cond = $options_type.fit_components_cond
22 #set fit_components = $fit_components_cond.fit_components 22 #set fit_components = $fit_components_cond.fit_components
23 #else:
24 #set codeml_ctl_file_select = 'no'
25 #set fit_components = 'no'
23 #end if 26 #end if
24 KaKsAnalysis 27 KaKsAnalysis
25 --config_dir '$scaffold.fields.path' 28 --config_dir '$scaffold.fields.path'
26 --num_threads \${GALAXY_SLOTS:-4} 29 --num_threads \${GALAXY_SLOTS:-4}
27 --coding_sequences_species_1 '$coding_sequences_species_1' 30 --coding_sequences_species_1 '$coding_sequences_species_1'