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comparison kaks_analysis.xml @ 2:db3e35944c09 draft

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author greg
date Wed, 01 Mar 2017 11:04:34 -0500
parents 431e4f3487a7
children bbc153dbaee7
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1:431e4f3487a7 2:db3e35944c09
44 #end if 44 #end if
45 #end if 45 #end if
46 ]]> 46 ]]>
47 </command> 47 </command>
48 <inputs> 48 <inputs>
49 <param name="scaffold" type="select" label="Orthogroups or gene families proteins scaffold">
50 <options from_data_table="plant_tribes_scaffolds" />
51 <validator type="no_options" message="No PlantTribes scaffolds are available. Use the PlantTribes Scaffolds Download Data Manager tool in Galaxy to install and populate the PlantTribes scaffolds data table."/>
52 </param>
49 <param name="coding_sequences_species_1" format="fasta" type="data" label="Coding sequences (CDS) fasta file for the species" /> 53 <param name="coding_sequences_species_1" format="fasta" type="data" label="Coding sequences (CDS) fasta file for the species" />
50 <param name="proteins_species_1" format="fasta" type="data" label="Aamino acids (FNA) sequences fasta file for the species" /> 54 <param name="proteins_species_1" format="fasta" type="data" label="Aamino acids (FNA) sequences fasta file for the species" />
51 <conditional name="comparison_cond"> 55 <conditional name="comparison_cond">
52 <param name="comparison" type="select" label="Select method for pairwise sequence comparison to determine homolgous pairs" help="Cross species comparison requires selection of inputs for second species"> 56 <param name="comparison" type="select" label="Select method for pairwise sequence comparison to determine homolgous pairs" help="Cross species comparison requires selection of inputs for second species">
53 <option value="paralogs" selected="true">Self species comparison</option> 57 <option value="paralogs" selected="true">Self species comparison</option>