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comparison kaks_analysis.xml @ 8:dab0ce7e128a draft

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Uploaded
author greg
date Wed, 01 Mar 2017 13:54:29 -0500
parents cecea681ef40
children 5dc3d20ff598
comparison
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7:cecea681ef40 8:dab0ce7e128a
33 #if str($comparison) == 'orthologs': 33 #if str($comparison) == 'orthologs':
34 --coding_sequences_species_2 '$comparison_cond.coding_sequences_species_2' 34 --coding_sequences_species_2 '$comparison_cond.coding_sequences_species_2'
35 --proteins_species_2 '$comparison_cond.proteins_species_2' 35 --proteins_species_2 '$comparison_cond.proteins_species_2'
36 #end if 36 #end if
37 #if str($options_type.options_type_selector) == 'advanced': 37 #if str($options_type.options_type_selector) == 'advanced':
38 --min_coverage $min_coverage 38 --min_coverage $options_type.min_coverage
39 --recalibration_rate $recalibration_rate 39 --recalibration_rate $options_type.recalibration_rate
40 #if str($codeml_ctl_file_select) == 'yes': 40 #if str($codeml_ctl_file_select) == 'yes':
41 --codeml_ctl_file '$codeml_ctl_file_cond.codeml_ctl_file' 41 --codeml_ctl_file '$codeml_ctl_file_cond.codeml_ctl_file'
42 # No else block needed here because the default codeml_ctl config 42 # No else block needed here because the default codeml_ctl config
43 # will be used if the --codeml_ctl_file flag is missing. 43 # will be used if the --codeml_ctl_file flag is missing.
44 #end if 44 #end if