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comparison kaks_analysis.xml @ 32:9821735dccc4 draft

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author greg
date Fri, 05 May 2017 09:34:38 -0400
parents 9b78e5c2a14e
children 8ff9aac5419f
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31:9b78e5c2a14e 32:9821735dccc4
2 <description>estimates paralogous and orthologous pairwise synonymous (Ks) and non-synonymous (Ka) substitution rates</description> 2 <description>estimates paralogous and orthologous pairwise synonymous (Ks) and non-synonymous (Ka) substitution rates</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements_kaks_analysis" /> 6 <expand macro="requirements_kaks_analysis" />
7 <expand macro="stdio" /> 7 <command detect_errors="exit_code">
8 <command>
9 <![CDATA[ 8 <![CDATA[
10 #set output_dir = 'kaksAnalysis_dir' 9 #set output_dir = 'kaksAnalysis_dir'
11 #set comparison = $comparison_cond.comparison 10 #set comparison = $comparison_cond.comparison
12 #if str($options_type.options_type_selector) == 'advanced': 11 #if str($options_type.options_type_selector) == 'advanced':
13 #set codeml_ctl_file_cond = $options_type.codeml_ctl_file_cond 12 #set codeml_ctl_file_cond = $options_type.codeml_ctl_file_cond