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comparison kaks_analysis.xml @ 9:5dc3d20ff598 draft

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Uploaded
author greg
date Wed, 01 Mar 2017 13:58:32 -0500
parents dab0ce7e128a
children f8558fb37545
comparison
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8:dab0ce7e128a 9:5dc3d20ff598
49 #end if 49 #end if
50 #end if 50 #end if
51 >/dev/null 51 >/dev/null
52 && mv $output_dir/species1.fna '$output_species1_fna' 52 && mv $output_dir/species1.fna '$output_species1_fna'
53 && mv $output_dir/species1.faa '$output_species1_faa' 53 && mv $output_dir/species1.faa '$output_species1_faa'
54 #if str($comparison) == 'orthologs': 54 #if str($comparison) == 'paralogs':
55 && mv $output_dir/species1.fna.blastn.paralogs '$output_species1_paralog' 55 && mv $output_dir/species1.fna.blastn.paralogs '$output_species1_paralog'
56 #end if 56 #else:
57 #if str($comparison) == 'orthologs':
58 && mv $output_dir/species2.faa '$output_species2_faa' 57 && mv $output_dir/species2.faa '$output_species2_faa'
59 && mv $output_dir/species2.fna '$output_species2_fna' 58 && mv $output_dir/species2.fna '$output_species2_fna'
60 && mv $output_dir/species1.fna.blastn.orthologs '$output_species1_ortholog' 59 && mv $output_dir/species1.fna.blastn.orthologs '$output_species1_ortholog'
61 && mv $output_dir/species2.fna.blastn.orthologs '$output_species2_ortholog' 60 && mv $output_dir/species2.fna.blastn.orthologs '$output_species2_ortholog'
62 #end if 61 #end if