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comparison kaks_analysis.xml @ 41:1938f0ed6279 draft

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author greg
date Thu, 05 Oct 2017 14:25:47 -0400
parents 9b7b4f9d64de
children ec47f2f694e7
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40:9b7b4f9d64de 41:1938f0ed6279
1 <tool id="plant_tribes_kaks_analysis" name="KaKsAnalysis" version="@WRAPPER_VERSION@.2"> 1 <tool id="plant_tribes_kaks_analysis" name="KaKsAnalysis" version="@WRAPPER_VERSION@.3.0">
2 <description>estimates paralogous and orthologous pairwise synonymous (Ks) and non-synonymous (Ka) substitution rates</description> 2 <description>estimates paralogous and orthologous pairwise synonymous (Ks) and non-synonymous (Ka) substitution rates</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements_kaks_analysis" /> 6 <requirements>
7 <requirement type="package" version="1.0.3">plant_tribes_kaks_analysis</requirement>
8 </requirements>
7 <command detect_errors="exit_code"><![CDATA[ 9 <command detect_errors="exit_code"><![CDATA[
8 #set output_dir = 'kaksAnalysis_dir' 10 #set output_dir = 'kaksAnalysis_dir'
9 #set comparison = $comparison_cond.comparison 11 #set comparison = $comparison_cond.comparison
10 #if str($options_type.options_type_selector) == 'advanced': 12 #if str($options_type.options_type_selector) == 'advanced':
11 #set codeml_ctl_file_cond = $options_type.codeml_ctl_file_cond 13 #set codeml_ctl_file_cond = $options_type.codeml_ctl_file_cond