Mercurial > repos > greg > kaks_analysis

comparison kaks_analysis.xml @ 23:17bc7752ff2f draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author greg
date Thu, 16 Mar 2017 14:33:04 -0400
parents 619d277ee874
children 4c656319acb2
comparison
equal deleted inserted replaced
22:619d277ee874 23:17bc7752ff2f
1 <tool id="plant_tribes_kaks_analysis" name="Perform orthologous or paralogous ks analyses" version="0.8.0"> 1 <tool id="plant_tribes_kaks_analysis" name="KaKsAnalysis" version="0.8.0">
2 <description>of coding sequences and amino acid sequences</description> 2 <description>estimates paralogous and orthologous pairwise synonymous (ks) and non-synonymous (ka) substitution rates</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.8">plant_tribes_kaks_analysis</requirement> 4 <requirement type="package" version="0.8">plant_tribes_kaks_analysis</requirement>
5 </requirements> 5 </requirements>
6 <stdio> 6 <stdio>
7 <!-- Anything other than zero is an error --> 7 <!-- Anything other than zero is an error -->
226 - **Upper limit of synonymous subsitutions (ks)** - Upper limit of synonymous subsitutions (ks) - necessary if fitting components to the distribution to exclude likey ancient paralogous pairs. 226 - **Upper limit of synonymous subsitutions (ks)** - Upper limit of synonymous subsitutions (ks) - necessary if fitting components to the distribution to exclude likey ancient paralogous pairs.
227 227
228 </help> 228 </help>
229 <citations> 229 <citations>
230 <citation type="bibtex"> 230 <citation type="bibtex">
231 @unpublished{None, 231 @article{None,
232 author = {Eric Wafula}, 232 journal = {None},
233 title = {None}, 233 author = {1. Wafula EK},
234 title = {Manuscript in preparation},
234 year = {None}, 235 year = {None},
235 url = {https://github.com/dePamphilis/PlantTribes} 236 url = {https://github.com/dePamphilis/PlantTribes},}
236 }
237 </citation> 237 </citation>
238 <citation type="doi">10.1093/bioinformatics/btw412</citation> 238 <citation type="doi">10.1093/bioinformatics/btw412</citation>
239 <citation type="doi">10.1186/1471-2105-10-421</citation> 239 <citation type="doi">10.1186/1471-2105-10-421</citation>
240 <citation type="doi">10.1093/molbev/msm088</citation> 240 <citation type="doi">10.1093/molbev/msm088</citation>
241 <citation type="doi">10.18637/jss.v004.i02</citation> 241 <citation type="doi">10.18637/jss.v004.i02</citation>