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comparison kaks_analysis.xml @ 49:14d9e00d4a01 draft

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author greg
date Tue, 24 Oct 2017 10:39:38 -0400
parents fbfc754b18ee
children 0718066d4795
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48:fbfc754b18ee 49:14d9e00d4a01
61 #end if 61 #end if
62 #if str($set_upper_ks_limit) == 'yes': 62 #if str($set_upper_ks_limit) == 'yes':
63 --max_ks $set_upper_ks_limit_cond.max_ks 63 --max_ks $set_upper_ks_limit_cond.max_ks
64 #end if 64 #end if
65 #end if 65 #end if
66 2>/dev/null 66 &>/dev/null
67 && mv $output_dir/species1.fna '$output_species1_fna' 67 && mv $output_dir/species1.fna '$output_species1_fna'
68 && mv $output_dir/species1.faa '$output_species1_faa' 68 && mv $output_dir/species1.faa '$output_species1_faa'
69 #if str($comparison) == 'paralogs': 69 #if str($comparison) == 'paralogs':
70 && mv $output_dir/species1.fna.blastn.paralogs '$output_species1_paralog' 70 && mv $output_dir/species1.fna.blastn.paralogs '$output_species1_paralog'
71 && mv $output_dir/*.rbhb '$output_rbhb_paralog' 71 && mv $output_dir/*.rbhb '$output_rbhb_paralog'