Mercurial > repos > greg > insect_phenology_model

changeset 87:522fe34a1dfc draft

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Uploaded
author greg
date Wed, 22 Nov 2017 13:14:08 -0500
parents 5e1f9fde280c
children b387ea636ff8
files insect_phenology_model.R
diffstat 1 files changed, 5 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/insect_phenology_model.R	Wed Nov 22 13:14:01 2017 -0500
+++ b/insect_phenology_model.R	Wed Nov 22 13:14:08 2017 -0500
@@ -18,7 +18,8 @@
     make_option(c("-s", "--replications"), action="store", dest="replications", type="integer", help="Number of replications"),
     make_option(c("-t", "--se_plot"), action="store", dest="se_plot", help="Plot SE"),
     make_option(c("-v", "--input"), action="store", dest="input", help="Temperature data for selected location"),
-    make_option(c("-y", "--young_nymph_accum"), action="store", dest="young_nymph_accum", type="integer", help="Adjustment of DD accumulation (egg->young nymph)")
+    make_option(c("-y", "--young_nymph_accum"), action="store", dest="young_nymph_accum", type="integer", help="Adjustment of DD accumulation (egg->young nymph)"),
+    make_option(c("-x", "--insect"), action="store", dest="insect", help="Insect name")
 )
 
 parser <- OptionParser(usage="%prog [options] file", option_list=option_list)
@@ -575,7 +576,7 @@
 par(mar = c(5, 6, 4, 4), mfrow=c(3, 1))
 
 # Subfigure 1: population size by life stage
-title <- paste("BSMB total population by life stage :", opt$location, ": Lat:", latitude, ":", start_date, "to", end_date, sep=" ")
+title <- paste("opt$insect : Total pop. by life stage :", opt$location, ": Lat:", latitude, ":", start_date, "-", end_date, sep=" ")
 plot(day.all, sa, main=title, type="l", ylim=c(0, max(se + se.se, sn + sn.se, sa + sa.se)), axes=F, lwd=2, xlab="", ylab="", cex=3, cex.lab=3, cex.axis=3, cex.main=3)
 # Young and old nymphs.
 lines(day.all, sn, lwd=2, lty=1, col=2)
@@ -599,7 +600,7 @@
 }
 
 # Subfigure 2: population size by generation
-title <- paste("BSMB total population by generation :", opt$location, ": Lat:", latitude, ":", start_date, "to", end_date, sep=" ")
+title <- paste("opt$insect : Total pop. by generation :", opt$location, ": Lat:", latitude, ":", start_date, "-", end_date, sep=" ")
 plot(day.all, g0, main=title, type="l", ylim=c(0, max(g2)), axes=F, lwd=2, xlab="", ylab="", cex=3, cex.lab=3, cex.axis=3, cex.main=3)
 lines(day.all, g1, lwd = 2, lty = 1, col=2)
 lines(day.all, g2, lwd = 2, lty = 1, col=4)
@@ -621,7 +622,7 @@
 }
 
 # Subfigure 3: adult population size by generation
-title <- paste("BSMB adult population by generation :", opt$location, ": Lat:", latitude, ":", start_date, "to", end_date, sep=" ")
+title <- paste("opt$insect : Adult pop. by generation :", opt$location, ": Lat:", latitude, ":", start_date, "-", end_date, sep=" ")
 plot(day.all, g0a, ylim=c(0, max(g2a) + 100), main=title, type="l", axes=F, lwd=2, xlab="", ylab="", cex=3, cex.lab=3, cex.axis=3, cex.main=3)
 lines(day.all, g1a, lwd = 2, lty = 1, col=2)
 lines(day.all, g2a, lwd = 2, lty = 1, col=4)