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comparison insect_phenology_model.xml @ 42:c0a898a7bf32 draft

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author greg
date Sun, 12 Nov 2017 10:18:18 -0500
parents 3852133fb058
children 1b3020d54cbe
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41:758c6e5f29a9 42:c0a898a7bf32
1 <?xml version="."?>
2 <tool id="insect_phenology_model" name="Insect phenology model" version="1.1.0"> 1 <tool id="insect_phenology_model" name="Insect phenology model" version="1.1.0">
3 <description>expressing stage-specific phenology and population dynamics</description> 2 <description>expressing stage-specific phenology and population dynamics</description>
4 <requirements> 3 <requirements>
5 <requirement type="package" version="1.4.4">r-optparse</requirement> 4 <requirement type="package" version="1.6.0">r-lubridate</requirement>
5 <requirement type="package" version="1.4.4">r-optparse</requirement>
6 </requirements> 6 </requirements>
7 <command detect_errors="exit_code"><![CDATA[ 7 <command detect_errors="exit_code"><![CDATA[
8 Rscript '$__tool_directory__/insect_phenology_model.R' 8 Rscript '$__tool_directory__/insect_phenology_model.R'
9 -a $adult_mort 9 -a $adult_mort
10 -b $adult_accum 10 -b $adult_accum
22 -t $se_plot 22 -t $se_plot
23 -v '$input' 23 -v '$input'
24 -y $young_nymph_accum 24 -y $young_nymph_accum
25 ]]></command> 25 ]]></command>
26 <inputs> 26 <inputs>
27 <param name="input" type="data" format="csv" label="Temperature data" />
27 <param name="location" type="text" value="" optional="false" label="Location" /> 28 <param name="location" type="text" value="" optional="false" label="Location" />
28 <param name="input" type="data" format="csv" label="Temperature data" />
29 <param name="replications" type="integer" value="10" min="1" label="Number of replications" /> 29 <param name="replications" type="integer" value="10" min="1" label="Number of replications" />
30 <param name="photoperiod" type="float" value="13.5" min="0" label="Critical photoperiod for diapause induction/termination" /> 30 <param name="photoperiod" type="float" value="13.5" min="0" label="Critical photoperiod for diapause induction/termination" />
31 <param name="egg_mort" type="integer" value="1" min="0" label="Adjustment rate for egg mortality" /> 31 <param name="egg_mort" type="integer" value="1" min="0" label="Adjustment rate for egg mortality" />
32 <param name="nymph_mort" type="integer" value="1" min="0" label="Adjustment rate for nymph mortality" /> 32 <param name="nymph_mort" type="integer" value="1" min="0" label="Adjustment rate for nymph mortality" />
33 <param name="adult_mort" type="integer" value="1" min="0" label="Adjustment rate for adult mortality" /> 33 <param name="adult_mort" type="integer" value="1" min="0" label="Adjustment rate for adult mortality" />
45 <outputs> 45 <outputs>
46 <data name="output" format="pdf" label="${tool.name} ${location}, on ${on_string}" /> 46 <data name="output" format="pdf" label="${tool.name} ${location}, on ${on_string}" />
47 </outputs> 47 </outputs>
48 <tests> 48 <tests>
49 <test> 49 <test>
50 <param name="input" value="asheville2014.csv" ftype="csv" /> 50 <param name="input" value="state_college.csv" ftype="csv" />
51 <param name="location" value="Asheville" /> 51 <param name="location" value="State College PA" />
52 <param name="replications" value="3" /> 52 <param name="replications" value="10" />
53 <output name="output" file="output.pdf" ftype="pdf" compare="contains" /> 53 <output name="output" file="output.pdf" ftype="pdf" compare="contains" />
54 </test> 54 </test>
55 </tests> 55 </tests>
56 <help> 56 <help>
57 **What it does** 57 **What it does**