Mercurial > repos > greg > insect_phenology_model

comparison insect_phenology_model.xml @ 21:a61f74f6d165 draft

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author greg
date Thu, 09 Nov 2017 08:08:59 -0500
parents 20bb9dee4b48
children 7fb723bc93b4
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20:20bb9dee4b48 21:a61f74f6d165
12 -e '$location' 12 -e '$location'
13 -f $max_clutch_size 13 -f $max_clutch_size
14 -i $min_clutch_size 14 -i $min_clutch_size
15 -j $nymph_mort 15 -j $nymph_mort
16 -k $old_nymph_accum 16 -k $old_nymph_accum
17 -n $temperature_data.metadata.data_lines 17 -n $input.metadata.data_lines
18 -o '$output' 18 -o '$output'
19 -p $oviposition 19 -p $oviposition
20 -q $photoperiod 20 -q $photoperiod
21 -s $replications 21 -s $replications
22 -t $se_plot 22 -t $se_plot
23 -u $year 23 -v '$input'
24 -v '$temperature_data'
25 -y $young_nymph_accum 24 -y $young_nymph_accum
26 ]]></command> 25 ]]></command>
27 <inputs> 26 <inputs>
28 <param name="location" type="select" label="Global Historical Climatology Network Station"> 27 <param name="location" type="text" value="" optional="false" label="Location" />
29 <options from_file="ghcnd_stations.txt"> 28 <param name="input" type="data" format="csv" label="Temperature data" />
30 <column name="name" index="1"/>
31 <column name="value" index="0"/>
32 <column name="state" index="2"/>
33 </options>
34 </param>
35 <param name="temperature_data" type="data" format="csv" label="Temperature data" />
36 <param name="year" type="integer" value="2017" min="1995" label="Temperature data year" />
37 <param name="replications" type="integer" value="10" min="1" label="Number of replications" /> 29 <param name="replications" type="integer" value="10" min="1" label="Number of replications" />
38 <param name="photoperiod" type="float" value="13.5" min="0" label="Critical photoperiod for diapause induction/termination" /> 30 <param name="photoperiod" type="float" value="13.5" min="0" label="Critical photoperiod for diapause induction/termination" />
39 <param name="egg_mort" type="integer" value="1" min="0" label="Adjustment rate for egg mortality" /> 31 <param name="egg_mort" type="integer" value="1" min="0" label="Adjustment rate for egg mortality" />
40 <param name="nymph_mort" type="integer" value="1" min="0" label="Adjustment rate for nymph mortality" /> 32 <param name="nymph_mort" type="integer" value="1" min="0" label="Adjustment rate for nymph mortality" />
41 <param name="adult_mort" type="integer" value="1" min="0" label="Adjustment rate for adult mortality" /> 33 <param name="adult_mort" type="integer" value="1" min="0" label="Adjustment rate for adult mortality" />
49 <option value="1" selected="True">Yes</option> 41 <option value="1" selected="True">Yes</option>
50 <option value="0">No</option> 42 <option value="0">No</option>
51 </param> 43 </param>
52 </inputs> 44 </inputs>
53 <outputs> 45 <outputs>
54 <data name="output" format="pdf" label="${tool.name} ${location}, ${year} on ${on_string}" /> 46 <data name="output" format="pdf" label="${tool.name} ${location}, on ${on_string}" />
55 </outputs> 47 </outputs>
56 <tests> 48 <tests>
57 <test> 49 <test>
58 <param name="temperature_data" value="asheville2014.csv" ftype="csv" /> 50 <param name="input" value="asheville2014.csv" ftype="csv" />
59 <param name="location" value="asheville:35.58" /> 51 <param name="location" value="State College" />
60 <param name="year" value="2014" />
61 <param name="replications" value="3" /> 52 <param name="replications" value="3" />
62 <output name="output" file="output.pdf" ftype="pdf" compare="contains" /> 53 <output name="output" file="output.pdf" ftype="pdf" compare="contains" />
63 </test> 54 </test>
64 </tests> 55 </tests>
65 <help> 56 <help>
71 62
72 **Required options** 63 **Required options**
73 64
74 * **Location** - the location associated with the selected temperature data. 65 * **Location** - the location associated with the selected temperature data.
75 * **Temperature data** - select the dataset from your history containing the temperature data. 66 * **Temperature data** - select the dataset from your history containing the temperature data.
76 * **Temperature data year** - the year during which the temperature data was recorded.
77 * **Number of replications** - number of replications. 67 * **Number of replications** - number of replications.
78 * **Critical photoperiod for diapause induction/termination** - critical photoperiod for diapause induction/termination. 68 * **Critical photoperiod for diapause induction/termination** - critical photoperiod for diapause induction/termination.
79 * **Adjustment rate for egg mortality** - adjustment rate for egg mortality. 69 * **Adjustment rate for egg mortality** - adjustment rate for egg mortality.
80 * **Adjustment rate for nymph mortality** - adjustment rate for nymph mortality. 70 * **Adjustment rate for nymph mortality** - adjustment rate for nymph mortality.
81 * **Adjustment rate for adult mortality** - adjustment rate for adult mortality. 71 * **Adjustment rate for adult mortality** - adjustment rate for adult mortality.