Mercurial > repos > greg > insect_phenology_model

comparison insect_phenology_model.R @ 41:758c6e5f29a9 draft

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author greg
date Thu, 09 Nov 2017 14:05:36 -0500
parents ece79df73287
children 5260db6479db
comparison
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40:ece79df73287 41:758c6e5f29a9
584 pdf(file=opt$output, height=20, width=20, bg="white") 584 pdf(file=opt$output, height=20, width=20, bg="white")
585 585
586 par(mar = c(5, 6, 4, 4), mfrow=c(3, 1)) 586 par(mar = c(5, 6, 4, 4), mfrow=c(3, 1))
587 587
588 # Subfigure 2: population size by life stage 588 # Subfigure 2: population size by life stage
589 title <- paste("BSMB Total Population Size by Life Stage:", opt$location, ", "Latitude:", latitude, ", Temperature Dates:", start_date, "to", end_date, sep=" ") 589 title <- paste("BSMB Total Population Size by Life Stage:", opt$location, ", Latitude:", latitude, ", Temperature Dates:", start_date, "to", end_date, sep=" ")
590 plot(day.all, sa, main=title, type="l", ylim=c(0, max(se + se.se, sn + sn.se, sa + sa.se)), axes=F, lwd=2, xlab="", ylab="Number", cex=2, cex.lab=2, cex.axis=2, cex.main=2) 590 plot(day.all, sa, main=title, type="l", ylim=c(0, max(se + se.se, sn + sn.se, sa + sa.se)), axes=F, lwd=2, xlab="", ylab="Number", cex=2, cex.lab=2, cex.axis=2, cex.main=2)
591 # Young and old nymphs. 591 # Young and old nymphs.
592 lines(day.all, sn, lwd=2, lty=1, col=2) 592 lines(day.all, sn, lwd=2, lty=1, col=2)
593 # Eggs 593 # Eggs
594 lines(day.all, se, lwd=2, lty=1, col=4) 594 lines(day.all, se, lwd=2, lty=1, col=4)
608 lines (day.all, se + se.se, col=4, lty=2) 608 lines (day.all, se + se.se, col=4, lty=2)
609 lines (day.all, se - se.se, col=4, lty=2) 609 lines (day.all, se - se.se, col=4, lty=2)
610 } 610 }
611 611
612 # Subfigure 3: population size by generation 612 # Subfigure 3: population size by generation
613 title <- paste("BSMB Total Population Size by Generation:", opt$location, "Latitude:", latitude, Temperature Dates:", start_date, "to", end_date, sep=" ") 613 title <- paste("BSMB Total Population Size by Generation:", opt$location, ", Latitude:", latitude, ", Temperature Dates:", start_date, "to", end_date, sep=" ")
614 plot(day.all, g0, main=title, type="l", ylim=c(0, max(g2)), axes=F, lwd=2, xlab="", ylab="Number", cex=2, cex.lab=2, cex.axis=2, cex.main=2) 614 plot(day.all, g0, main=title, type="l", ylim=c(0, max(g2)), axes=F, lwd=2, xlab="", ylab="Number", cex=2, cex.lab=2, cex.axis=2, cex.main=2)
615 lines(day.all, g1, lwd = 2, lty = 1, col = 2) 615 lines(day.all, g1, lwd = 2, lty = 1, col = 2)
616 lines(day.all, g2, lwd = 2, lty = 1, col = 4) 616 lines(day.all, g2, lwd = 2, lty = 1, col = 4)
617 axis(1, at = c(1:12) * 30 - 15, cex.axis = 2, labels = c("Jan", "Feb", "Mar", "Apr", "May", "Jun", "Jul", "Aug", "Sep", "Oct", "Nov", "Dec")) 617 axis(1, at = c(1:12) * 30 - 15, cex.axis = 2, labels = c("Jan", "Feb", "Mar", "Apr", "May", "Jun", "Jul", "Aug", "Sep", "Oct", "Nov", "Dec"))
618 axis(2, cex.axis = 2) 618 axis(2, cex.axis = 2)
630 lines (day.all, g2 + g2.se, col = 4, lty = 2) 630 lines (day.all, g2 + g2.se, col = 4, lty = 2)
631 lines (day.all, g2 - g2.se, col = 4, lty = 2) 631 lines (day.all, g2 - g2.se, col = 4, lty = 2)
632 } 632 }
633 633
634 # Subfigure 4: adult population size by generation 634 # Subfigure 4: adult population size by generation
635 title <- paste("BSMB Adult Population Size by Generation:", opt$location, "Latitude:", latitude, Temperature Dates:", start_date, "to", end_date, sep=" ") 635 title <- paste("BSMB Adult Population Size by Generation:", opt$location, ", Latitude:", latitude, ", Temperature Dates:", start_date, "to", end_date, sep=" ")
636 plot(day.all, g0a, ylim=c(0, max(g2a) + 100), main=title, type="l", axes=F, lwd=2, xlab="Year", ylab="Number", cex=2, cex.lab=2, cex.axis=2, cex.main=2) 636 plot(day.all, g0a, ylim=c(0, max(g2a) + 100), main=title, type="l", axes=F, lwd=2, xlab="Year", ylab="Number", cex=2, cex.lab=2, cex.axis=2, cex.main=2)
637 lines(day.all, g1a, lwd = 2, lty = 1, col = 2) 637 lines(day.all, g1a, lwd = 2, lty = 1, col = 2)
638 lines(day.all, g2a, lwd = 2, lty = 1, col = 4) 638 lines(day.all, g2a, lwd = 2, lty = 1, col = 4)
639 axis(1, at = c(1:12) * 30 - 15, cex.axis = 2, labels = c("Jan", "Feb", "Mar", "Apr", "May", "Jun", "Jul", "Aug", "Sep", "Oct", "Nov", "Dec")) 639 axis(1, at = c(1:12) * 30 - 15, cex.axis = 2, labels = c("Jan", "Feb", "Mar", "Apr", "May", "Jun", "Jul", "Aug", "Sep", "Oct", "Nov", "Dec"))
640 axis(2, cex.axis = 2) 640 axis(2, cex.axis = 2)