Mercurial > repos > greg > insect_phenology_model

comparison insect_phenology_model.xml @ 95:08571981adb3 draft

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author greg
date Mon, 04 Dec 2017 10:57:52 -0500
parents 1615e60cf61c
children 375a2b8e7207
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94:89492de287a6 95:08571981adb3
34 <param name="nymph_mort" type="integer" value="1" min="0" label="Adjustment rate for nymph mortality" /> 34 <param name="nymph_mort" type="integer" value="1" min="0" label="Adjustment rate for nymph mortality" />
35 <param name="adult_mort" type="integer" value="1" min="0" label="Adjustment rate for adult mortality" /> 35 <param name="adult_mort" type="integer" value="1" min="0" label="Adjustment rate for adult mortality" />
36 <param name="oviposition" type="integer" value="1" min="0" label="Adjustment oviposition rate" /> 36 <param name="oviposition" type="integer" value="1" min="0" label="Adjustment oviposition rate" />
37 <param name="min_clutch_size" type="integer" value="0" min="0" label="Adjustment of minimum clutch size" /> 37 <param name="min_clutch_size" type="integer" value="0" min="0" label="Adjustment of minimum clutch size" />
38 <param name="max_clutch_size" type="integer" value="0" min="0" label="Adjustment of maximum clutch size" /> 38 <param name="max_clutch_size" type="integer" value="0" min="0" label="Adjustment of maximum clutch size" />
39 <param name="young_nymph_accum" type="integer" value="0" min="0" label="Adjustment of DD accumulation (egg->young nymph)" /> 39 <param name="young_nymph_accum" type="integer" value="0" min="0" label="Adjustment of degree-days accumulation (egg->young nymph)" />
40 <param name="old_nymph_accum" type="integer" value="0" min="0" label="Adjustment of DD accumulation (young nymph->old nymph)" /> 40 <param name="old_nymph_accum" type="integer" value="0" min="0" label="Adjustment of degree-days accumulation (young nymph->old nymph)" />
41 <param name="adult_accum" type="integer" value="0" min="0" label="Adjustment of DD accumulation (old nymph->adult)" /> 41 <param name="adult_accum" type="integer" value="0" min="0" label="Adjustment of degree-days accumulation (old nymph->adult)" />
42 <param name="std_error_plot" type="select" label="Plot standard error?"> 42 <param name="std_error_plot" type="select" label="Plot standard error?">
43 <option value="1" selected="True">Yes</option> 43 <option value="1" selected="True">Yes</option>
44 <option value="0">No</option> 44 <option value="0">No</option>
45 </param> 45 </param>
46 </inputs> 46 </inputs>
55 <output name="output" file="output.pdf" ftype="pdf" compare="contains" /> 55 <output name="output" file="output.pdf" ftype="pdf" compare="contains" />
56 </test> 56 </test>
57 </tests> 57 </tests>
58 <help> 58 <help>
59 **What it does** 59 **What it does**
60 60
61 Provides an agent-based stochastic model expressing stage-specific phenology and population dynamics for an insect species across geographic regions. 61 Provides an agent-based stochastic model expressing stage-specific phenology and population dynamics for an insect species across geographic regions.
62 62
63 ----- 63 -----
64 64
65 **Required options** 65 **Required options**
72 * **Adjustment rate for nymph mortality** - adjustment rate for nymph mortality. 72 * **Adjustment rate for nymph mortality** - adjustment rate for nymph mortality.
73 * **Adjustment rate for adult mortality** - adjustment rate for adult mortality. 73 * **Adjustment rate for adult mortality** - adjustment rate for adult mortality.
74 * **Adjustment oviposition rate** - adjustment oviposition rate. 74 * **Adjustment oviposition rate** - adjustment oviposition rate.
75 * **Adjustment of minimum clutch size** - adjustment of minimum clutch size. 75 * **Adjustment of minimum clutch size** - adjustment of minimum clutch size.
76 * **Adjustment of maximum clutch size** - adjustment of maximum clutch size 76 * **Adjustment of maximum clutch size** - adjustment of maximum clutch size
77 * **Adjustment of DD accumulation (egg->young nymph)** - adjustment of DD accumulation (egg->young nymph). 77 * **Adjustment of degree-days accumulation (egg->young nymph)** - adjustment of degree-days accumulation (egg->young nymph).
78 * **Adjustment of DD accumulation (young nymph->old nymph)** - adjustment of DD accumulation (young nymph->old nymph). 78 * **Adjustment of degree-days accumulation (young nymph->old nymph)** - adjustment of degree-days accumulation (young nymph->old nymph).
79 * **Adjustment of DD accumulation (old nymph->adult)** - adjustment of DD accumulation (old nymph->adult). 79 * **Adjustment of degree-days accumulation (old nymph->adult)** - adjustment of degree-days accumulation (old nymph->adult).
80 * **Plot SE** - add SE lines to plot for eggs, nymphs and adults. 80 * **Plot SE** - add SE lines to plot for eggs, nymphs and adults.
81 81
82 </help> 82 </help>
83 <citations> 83 <citations>
84 <citation type="doi">10.3389/fphys.2016.00165</citation> 84 <citation type="doi">10.3389/fphys.2016.00165</citation>
85 <citation type="doi">10.1175/JTECH-D-11-00103.1</citation> 85 <citation type="doi">10.1175/JTECH-D-11-00103.1</citation>
86 <citation type="doi">10.7289/V5D21VHZ</citation> 86 <citation type="doi">10.7289/V5D21VHZ</citation>