Mercurial > repos > greg > ideas_preprocessor

changeset 6:6fe65d1379a8 draft

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Uploaded
author greg
date Wed, 24 Jan 2018 09:55:21 -0500
parents 2b4e1bd725f7
children 92bb33490bb4
files ideas_preprocessor.xml
diffstat 1 files changed, 2 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/ideas_preprocessor.xml	Wed Jan 24 08:30:05 2018 -0500
+++ b/ideas_preprocessor.xml	Wed Jan 24 09:55:21 2018 -0500
@@ -31,11 +31,9 @@
 Rscript '$__tool_directory__/ideas_preprocessor.R'
 --ideaspre_input_config '$ideaspre_input_config'
 #if str($specify_chrom_window) == "yes":
-    --ideas_input_config '$ideas_input_config'
+    --chrom_bed_input '$specify_chrom_window_cond.chrom_bed_input'
     --chromosome_windows '$chromosome_windows'
-#end if
-#if str($specify_chrom_window) == "yes":
-    --chrom_bed_input '$specify_chrom_window_cond.chrom_bed_input'
+    --ideas_input_config '$ideas_input_config'
 #else:
     --chrom_len_file '$chromInfo'
     --window_size $specify_chrom_window_cond.window_size