# HG changeset patch
# User greg
# Date 1516896876 18000
# Node ID ce2021cd68d2e8be82f6ef0d0925ff1003213328
# Parent  20c21d946a8e28027d4e59375ee49ff154b6af9e
Uploaded

diff -r 20c21d946a8e -r ce2021cd68d2 ideas_preprocessor.R
--- a/ideas_preprocessor.R	Wed Jan 24 14:04:55 2018 -0500
+++ b/ideas_preprocessor.R	Thu Jan 25 11:14:36 2018 -0500
@@ -111,7 +111,7 @@
     # Renane opt$chrom_bed_input to be chromosomes.bed
     # and make a copy of it in the output directory.
     to_path = paste(opt$output_files_path, "chromosomes.bed", sep="/");
-    file.copy(opt$chromosome_windows, to_path);
+    file.copy(opt$chrom_bed_input, to_path);
     # Move chromosome_windows.txt to the output directory.
     to_path = paste(opt$output_files_path, opt$chromosome_windows, sep="/");
     file.rename(opt$chromosome_windows, to_path);