Mercurial > repos > greg > ideas_preprocessor
comparison ideas_preprocessor.R @ 30:0cb6ff8ba6df draft
Uploaded
| author | greg |
|---|---|
| date | Tue, 06 Feb 2018 08:30:17 -0500 |
| parents | 3b3001355f44 |
| children | ea739695619d |
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| 29:3b3001355f44 | 30:0cb6ff8ba6df |
|---|---|
| 101 # Move the tmp archive to the output directory. | 101 # Move the tmp archive to the output directory. |
| 102 to_path = paste(opt$output_files_path, "tmp.tar.gz", sep="/"); | 102 to_path = paste(opt$output_files_path, "tmp.tar.gz", sep="/"); |
| 103 file.rename("tmp.tar.gz", to_path); | 103 file.rename("tmp.tar.gz", to_path); |
| 104 # Handle file names for display in the primary dataset if necessary. | 104 # Handle file names for display in the primary dataset if necessary. |
| 105 to_path = paste(opt$output_files_path, "chromosomes.bed", sep="/"); | 105 to_path = paste(opt$output_files_path, "chromosomes.bed", sep="/"); |
| 106 if (is.null(opt$chrom_bed_input) { | 106 if (is.null(opt$chrom_bed_input)) { |
| 107 # Move cbi_file to the output directory, | 107 # Move cbi_file to the output directory, |
| 108 # naming it chromosomes.bed. | 108 # naming it chromosomes.bed. |
| 109 file.rename(cbi_file, to_path); | 109 file.rename(cbi_file, to_path); |
| 110 } else { | 110 } else { |
| 111 # Copy opt$chrom_bed_input to the output | 111 # Copy opt$chrom_bed_input to the output |