Mercurial > repos > greg > ideas2
diff .shed.yml @ 0:b785bcfe5cd0 draft default tip
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author | greg |
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date | Mon, 12 Feb 2018 09:52:26 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/.shed.yml Mon Feb 12 09:52:26 2018 -0500 @@ -0,0 +1,17 @@ +name: ideas +owner: greg +description: | + Contains a tool that employs the IDEAS (Integrative and Discriminative Epigenome Annotation System) method for jointly and + quantitatively characterizing multivariate epigenetic landscapes in many cell types, tissues or conditions +homepage_url: http://sites.stat.psu.edu/~yzz2/IDEAS/ +long_description: | + Contains a tool that employs the IDEAS (Integrative and Discriminative Epigenome Annotation System) method for jointly and + quantitatively characterizing multivariate epigenetic landscapes in many cell types, tissues or conditions. The method + accounts for position dependent epigenetic events and detects local cell type relationships, which not only help to improve + the accuracy of annotating functional classes of DNA sequences, but also reveal cell type constitutive and specific loci. + The method utilizes Bayesian non-parametric techniques to automatically identify the best model size fitting to the data so + users do not have to specify the number of states. On the other hand, users can still specify the number of states if desired. +remote_repository_url: https://github.com/gregvonkuster/galaxy_tools/tree/master/tools/epigenetics/ideas +type: unrestricted +categories: +- Epigenetics