Mercurial > repos > greg > ideas
changeset 82:f6156d2888a3 draft
Uploaded
| author | greg |
|---|---|
| date | Thu, 24 Aug 2017 09:31:10 -0400 |
| parents | dda8772b5864 |
| children | 09f07994247f |
| files | ideas.xml |
| diffstat | 1 files changed, 8 insertions(+), 7 deletions(-) [+] |
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--- a/ideas.xml Thu Aug 24 09:28:26 2017 -0400 +++ b/ideas.xml Thu Aug 24 09:31:10 2017 -0400 @@ -110,19 +110,20 @@ && mv ./*.state $output_state ]]></command> <configfiles> - <configfile name="gen_prep_input_config"><![CDATA[#if str($input_type_cond.input_type) == "datasets": + <configfile name="gen_prep_input_config"><![CDATA[#import os +#if str($input_type_cond.input_type) == "datasets": #if str($input_type_cond.cell_type_epigenetic_factor_cond.cell_type_epigenetic_factor) == "extract": #set $cell_type_epigenetic_factor_cond = $input_type_cond.cell_type_epigenetic_factor_cond #set $input_name_positions = $cell_type_epigenetic_factor_cond.input_name_positions #for $i in $cell_type_epigenetic_factor_cond.input: - #set $file_name_with_ext = $os.path.basename($i) - #set $file_name = $file_name_with_ext.split(".")[0] + #set file_name_with_ext = $os.path.basename($i) + #set file_name = $file_name_with_ext.split(".")[0] #if str($input_name_positions) == "cell_first": - #set $cell_type_name = $file_name.split("-")[0] - #set $epigenetic_factor_name = $file_name.split("-")[1] + #set cell_type_name = $file_name.split("-")[0] + #set epigenetic_factor_name = $file_name.split("-")[1] #else: - #set $cell_type_name = $file_name.split("-")[1] - #set $epigenetic_factor_name = $file_name.split("-")[0] + #set cell_type_name = $file_name.split("-")[1] + #set epigenetic_factor_name = $file_name.split("-")[0] #end if ${cell_type_name} ${epigenetic_factor_name} ${i} #end for