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changeset 181:475fa65d5138 draft

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Uploaded
author greg
date Thu, 01 Feb 2018 12:54:15 -0500
parents 15bd502e6a0c
children 28a995056cd0
files ideas.R
diffstat 1 files changed, 0 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/ideas.R	Thu Feb 01 12:54:06 2018 -0500
+++ b/ideas.R	Thu Feb 01 12:54:15 2018 -0500
@@ -10,7 +10,6 @@
     make_option(c("--chromosome_windows"), action="store", dest="chromosome_windows", default=NULL, help="Windows positions by chroms config file"),
     make_option(c("--hp"), action="store_true", dest="hp", default=FALSE, help="Discourage state transition across chromosomes"),
     make_option(c("--initial_states"), action="store", dest="initial_states", type="integer", default=NULL, help="Initial number of states"),
-    make_option(c("--input_files_path"), action="store", dest="input_files_path", help="IdeasPre input dataset extra files path"),
     make_option(c("--ideas_input_config"), action="store", dest="ideas_input_config", help="IDEAS_input_config file"),
     make_option(c("--log2"), action="store", dest="log2", type="double", default=NULL, help="log2 transformation"),
     make_option(c("--maxerr"), action="store", dest="maxerr", type="double", default=NULL, help="Maximum standard deviation for the emission Gaussian distribution"),