Mercurial > repos > greg > ideas
changeset 27:0cf199863400 draft
Uploaded
| author | greg |
|---|---|
| date | Mon, 14 Aug 2017 09:02:58 -0400 |
| parents | 53891e4e4c63 |
| children | 91dc2a532890 |
| files | ideas.xml |
| diffstat | 1 files changed, 7 insertions(+), 10 deletions(-) [+] |
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--- a/ideas.xml Mon Aug 14 08:31:13 2017 -0400 +++ b/ideas.xml Mon Aug 14 09:02:58 2017 -0400 @@ -11,12 +11,10 @@ <command><![CDATA[ #import os #set tmp_dir = 'tmp' -#set prep_output_dir = 'prep_output' #set prep_output_config = 'prep_output_config.txt' -#set ideas_input_dir = 'ideas_input' -#set ideas_matrix_input_file = $os.path.join($ideas_input_dir, 'r_matrix.txt') -mkdir -p $prep_output_dir && -mkdir -p $ideas_input_dir && +##set ideas_input_dir = 'ideas_input' +##set ideas_matrix_input_file = $os.path.join($ideas_input_dir, 'r_matrix.txt') +##mkdir -p $ideas_input_dir && ############################################## ## Create the config file and prepare the data ############################################## @@ -126,11 +124,10 @@ -maxerr $set_max_standard_dev_cond.max_standard_dev #end if -thread \${GALAXY_SLOTS:-4} --o $prep_output_dir -&& mv $prep_output_dir/*cluster $output_cluster -&& mv $prep_output_dir/*.para $output_para -&& mv $prep_output_dir/*.profile $output_profile -&& mv $prep_output_dir/*.state $output_state +&& mv *.cluster $output_cluster +&& mv *.para $output_para +&& mv *.profile $output_profile +&& mv *.state $output_state ]]></command> <configfiles> <configfile name="prep_input_config"><![CDATA[#for $input_items in $input_type_cond.input_repeat: