# HG changeset patch
# User greg
# Date 1504615447 14400
# Node ID ff4d84a01fa71e2d32be0afc91dd3f9c05d7552b
# Parent  7d9af0d824ad93f3054fa6265f7b05e30e16065a
Uploaded

diff -r 7d9af0d824ad -r ff4d84a01fa7 ideas.xml
--- a/ideas.xml	Tue Sep 05 08:38:49 2017 -0400
+++ b/ideas.xml	Tue Sep 05 08:44:07 2017 -0400
@@ -237,13 +237,13 @@
     <help>
 **What it does**
 
-IDEAS (an **I**ntegrative and **D**iscriminative **E**pigenome **A**nnotation **S**ystem) identifies de novo
-regulatory functions from epigenetic data in multiple cell types jointly. It is a full probabilistic model
-defined on all data, and it combines signals across both the genome and cell types to boost power. The underlying
-assumption of IDEAS is that, because all cell types share the same underlying DNA sequences, **functions of each
-DNA segment should be correlated**. Also, cell type specific regulation is locus-dependent, and thus IDEAS uses
-local epigenetic landscape to **identify de novo and local cell type clusters** without assuming or requiring a
-known global cell type relationship.
+IDEAS (an **I**\ ntegrative and **D**\ iscriminative **E**\ pigenome **A**\ nnotation **S**\ ystem) identifies
+de novo regulatory functions from epigenetic data in multiple cell types jointly. It is a full probabilistic
+model defined on all data, and it combines signals across both the genome and cell types to boost power. The
+underlying assumption of IDEAS is that, because all cell types share the same underlying DNA sequences,
+**functions of each DNA segment should be correlated**. Also, cell type specific regulation is locus-dependent,
+and thus IDEAS uses local epigenetic landscape to **identify de novo and local cell type clusters** without
+assuming or requiring a known global cell type relationship.
 
 IDEAS takes as input a list of epigenetic data sets (histones, chromatin accessibility, CpG methylation, TFs, etc)
 or any other whole-genome data sets (e.g., scores). Currently the supported data formats include BigWig and BAM.