# HG changeset patch
# User greg
# Date 1511288396 18000
# Node ID e2995f2f127f6464bcc16db3b9008a0ea131c3ca
# Parent  7229e52fa8e1cf5595ad5cf8096d4c6e70f8e2ce
Uploaded

diff -r 7229e52fa8e1 -r e2995f2f127f ideas.xml
--- a/ideas.xml	Fri Nov 17 14:04:23 2017 -0500
+++ b/ideas.xml	Tue Nov 21 13:19:56 2017 -0500
@@ -212,7 +212,7 @@
         <data name="output_log" format="txt" label="${tool.name} (output log) on ${on_string}">
             <filter>save_ideas_log == 'yes'</filter>
         </data>
-        <collection name="output_pdf_collection" type="list">
+        <collection name="output_pdf_collection" type="list" label="${tool.name} (heatmaps on ${on_string}">
             <discover_datasets pattern="__name__" directory="output_pdf_dir" format="pdf"/>
         </collection>
         <collection name="output_txt_collection" type="list">
@@ -234,7 +234,7 @@
                 <element name="IDEAS_out.state" file="IDEAS_out.state" ftype="txt"/>
             </output_collection>
             <output_collection name="output_pdf_collection" type="list">
-                <element name="something.pdf" file="IDEAS_out.cluster" compare="contains"/>
+                <element name="IDEAS_out.pdf" file="IDEAS_out.pdf" compare="contains"/>
             </output_collection>
         </test>
         <test>
@@ -254,7 +254,7 @@
                 <element name="IDEAS_out.state" file="IDEAS_out.state" ftype="txt"/>
             </output_collection>
             <output_collection name="output_pdf_collection" type="list">
-                <element name="something.pdf" file="IDEAS_out.cluster" compare="contains"/>
+                <element name="IDEAS_out.pdf" file="IDEAS_out.pdf" compare="contains"/>
             </output_collection>
         </test>
     </tests>
diff -r 7229e52fa8e1 -r e2995f2f127f test-data/IDEAS_out.cluster
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/IDEAS_out.cluster	Tue Nov 21 13:19:56 2017 -0500
@@ -0,0 +1,1 @@
+id0 0:0 
diff -r 7229e52fa8e1 -r e2995f2f127f test-data/IDEAS_out.para
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/IDEAS_out.para	Tue Nov 21 13:19:56 2017 -0500
@@ -0,0 +1,2 @@
+#count	h3k4me3	h3k4me3*h3k4me3	
+60.000000	0.000000	10.000000	
diff -r 7229e52fa8e1 -r e2995f2f127f test-data/IDEAS_out.pdf
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/IDEAS_out.pdf	Tue Nov 21 13:19:56 2017 -0500
@@ -0,0 +1,40 @@
+1 0 obj
+<<
+/Title (R Graphics Output)
+/Creator (R)
+>>
+endobj
+2 0 obj
+endobj
+7 0 obj
+endobj
+8 0 obj
+<<
+>>
+endobj
+3 0 obj
+endobj
+4 0 obj
+/ProcSet [/PDF /Text]
+/Font <</F2 10 0 R >>
+/ExtGState << >>
+/ColorSpace << /sRGB 5 0 R >>
+>>
+endobj
+5 0 obj
+[/ICCBased 6 0 R]
+endobj
+6 0 obj
+endobj
+9 0 obj
+<<
+/Type /Encoding /BaseEncoding /WinAnsiEncoding
+/Differences [ 45/minus 96/quoteleft
+144/dotlessi /grave /acute /circumflex /tilde /macron /breve /dotaccent
+/dieresis /.notdef /ring /cedilla /.notdef /hungarumlaut /ogonek /caron /space]
+>>
+endobj
+10 0 obj
+endobj
+xref
+trailer
diff -r 7229e52fa8e1 -r e2995f2f127f test-data/IDEAS_out.profile
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/IDEAS_out.profile	Tue Nov 21 13:19:56 2017 -0500
@@ -0,0 +1,2 @@
+1 0.958910 
+49 0.980769 
diff -r 7229e52fa8e1 -r e2995f2f127f test-data/IDEAS_out.state
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/IDEAS_out.state	Tue Nov 21 13:19:56 2017 -0500
@@ -0,0 +1,51 @@
+#ID CHR POSst POSed e001 PosClass
+R100001 chr1 21819600 21819800 0 0
+R100002 chr1 21819800 21820000 0 1
+R100003 chr1 21820000 21820200 0 1
+R100004 chr1 21820200 21820400 0 1
+R100005 chr1 21820400 21820600 0 1
+R100006 chr1 21820600 21820800 0 1
+R100007 chr1 21820800 21821000 0 1
+R100008 chr1 21821000 21821200 0 1
+R100009 chr1 21821200 21821400 0 1
+R100010 chr1 21821400 21821600 0 1
+R100011 chr1 21821600 21821800 0 1
+R100012 chr1 21821800 21822000 0 1
+R100013 chr1 21822000 21822200 0 1
+R100014 chr1 21822200 21822400 0 1
+R100015 chr1 21822400 21822600 0 1
+R100016 chr1 21822600 21822800 0 1
+R100017 chr1 21822800 21823000 0 1
+R100018 chr1 21823000 21823200 0 1
+R100019 chr1 21823200 21823400 0 1
+R100020 chr1 21823400 21823600 0 1
+R100021 chr1 21823600 21823800 0 1
+R100022 chr1 21823800 21824000 0 1
+R100023 chr1 21824000 21824200 0 1
+R100024 chr1 21824200 21824400 0 1
+R100025 chr1 21824400 21824600 0 1
+R100026 chr1 21824600 21824800 0 1
+R100027 chr1 21824800 21825000 0 1
+R100028 chr1 21825000 21825200 0 1
+R100029 chr1 21825200 21825400 0 1
+R100030 chr1 21825400 21825600 0 1
+R100031 chr1 21825600 21825800 0 1
+R100032 chr1 21825800 21826000 0 1
+R100033 chr1 21826000 21826200 0 1
+R100034 chr1 21826200 21826400 0 1
+R100035 chr1 21826400 21826600 0 1
+R100036 chr1 21826600 21826800 0 1
+R100037 chr1 21826800 21827000 0 1
+R100038 chr1 21827000 21827200 0 1
+R100039 chr1 21827200 21827400 0 1
+R100040 chr1 21827400 21827600 0 1
+R100041 chr1 21827600 21827800 0 1
+R100042 chr1 21827800 21828000 0 1
+R100043 chr1 21828000 21828200 0 1
+R100044 chr1 21828200 21828400 0 1
+R100045 chr1 21828400 21828600 0 1
+R100046 chr1 21829000 21829200 0 1
+R100047 chr1 21829400 21829600 0 1
+R100048 chr1 21829600 21829800 0 1
+R100049 chr1 21829800 21830000 0 1
+R100050 chr1 21830000 21830200 0 1
diff -r 7229e52fa8e1 -r e2995f2f127f test-data/output_cluster.txt
--- a/test-data/output_cluster.txt	Fri Nov 17 14:04:23 2017 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,1 +0,0 @@
-id0 0:0 
diff -r 7229e52fa8e1 -r e2995f2f127f test-data/output_para.tabular
--- a/test-data/output_para.tabular	Fri Nov 17 14:04:23 2017 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,2 +0,0 @@
-#count	h3k4me3	h3k4me3*h3k4me3	
-60.000000	0.000000	10.000000	
diff -r 7229e52fa8e1 -r e2995f2f127f test-data/output_profile.txt
--- a/test-data/output_profile.txt	Fri Nov 17 14:04:23 2017 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,2 +0,0 @@
-1 0.958910 
-49 0.980769 
diff -r 7229e52fa8e1 -r e2995f2f127f test-data/output_state.txt
--- a/test-data/output_state.txt	Fri Nov 17 14:04:23 2017 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,51 +0,0 @@
-#ID CHR POSst POSed e001 PosClass
-R100001 chr1 21819600 21819800 0 0
-R100002 chr1 21819800 21820000 0 1
-R100003 chr1 21820000 21820200 0 1
-R100004 chr1 21820200 21820400 0 1
-R100005 chr1 21820400 21820600 0 1
-R100006 chr1 21820600 21820800 0 1
-R100007 chr1 21820800 21821000 0 1
-R100008 chr1 21821000 21821200 0 1
-R100009 chr1 21821200 21821400 0 1
-R100010 chr1 21821400 21821600 0 1
-R100011 chr1 21821600 21821800 0 1
-R100012 chr1 21821800 21822000 0 1
-R100013 chr1 21822000 21822200 0 1
-R100014 chr1 21822200 21822400 0 1
-R100015 chr1 21822400 21822600 0 1
-R100016 chr1 21822600 21822800 0 1
-R100017 chr1 21822800 21823000 0 1
-R100018 chr1 21823000 21823200 0 1
-R100019 chr1 21823200 21823400 0 1
-R100020 chr1 21823400 21823600 0 1
-R100021 chr1 21823600 21823800 0 1
-R100022 chr1 21823800 21824000 0 1
-R100023 chr1 21824000 21824200 0 1
-R100024 chr1 21824200 21824400 0 1
-R100025 chr1 21824400 21824600 0 1
-R100026 chr1 21824600 21824800 0 1
-R100027 chr1 21824800 21825000 0 1
-R100028 chr1 21825000 21825200 0 1
-R100029 chr1 21825200 21825400 0 1
-R100030 chr1 21825400 21825600 0 1
-R100031 chr1 21825600 21825800 0 1
-R100032 chr1 21825800 21826000 0 1
-R100033 chr1 21826000 21826200 0 1
-R100034 chr1 21826200 21826400 0 1
-R100035 chr1 21826400 21826600 0 1
-R100036 chr1 21826600 21826800 0 1
-R100037 chr1 21826800 21827000 0 1
-R100038 chr1 21827000 21827200 0 1
-R100039 chr1 21827200 21827400 0 1
-R100040 chr1 21827400 21827600 0 1
-R100041 chr1 21827600 21827800 0 1
-R100042 chr1 21827800 21828000 0 1
-R100043 chr1 21828000 21828200 0 1
-R100044 chr1 21828200 21828400 0 1
-R100045 chr1 21828400 21828600 0 1
-R100046 chr1 21829000 21829200 0 1
-R100047 chr1 21829400 21829600 0 1
-R100048 chr1 21829600 21829800 0 1
-R100049 chr1 21829800 21830000 0 1
-R100050 chr1 21830000 21830200 0 1