# HG changeset patch
# User greg
# Date 1510930983 18000
# Node ID e1b21d7e266a37d864370c7f5cc4270d851b1dec
# Parent  242ff1426fb4b55230bc85bc77003191123ea611
Uploaded

diff -r 242ff1426fb4 -r e1b21d7e266a ideas.xml
--- a/ideas.xml	Fri Nov 17 09:41:17 2017 -0500
+++ b/ideas.xml	Fri Nov 17 10:03:03 2017 -0500
@@ -12,7 +12,7 @@
 #set output_dir = "output_dir"
 #set tmp_dir = "tmp"
 #set prep_input_config = "prep_input_config.txt"
-#set prep_output_config = "IDEAS_out"
+#set prep_output_config = '$project_name'
 ##############################################
 ## Create the config file and prepare the data
 ##############################################
@@ -99,7 +99,7 @@
 && mv ./*.profile '$output_dir'
 && mv ./*.state '$output_dir'
 && Rscript '$__tool_directory__/create_heatmap.R'
--i '$output_dir/prep_output_config.txt.para'
+-i '$output_dir/$project_name.para'
 -o '$output_heatmap'
     ]]></command>
     <configfiles>