# HG changeset patch
# User greg
# Date 1503578482 14400
# Node ID c79952f352db3a75d4228aa0e2665e0306b390a3
# Parent  f22ea87463bd8b0b49f2b3a6fa29833950889f19
Uploaded

diff -r f22ea87463bd -r c79952f352db ideas.xml
--- a/ideas.xml	Thu Aug 24 08:33:38 2017 -0400
+++ b/ideas.xml	Thu Aug 24 08:41:22 2017 -0400
@@ -21,7 +21,7 @@
     #set cell_type_epigenetic_factor = $cell_type_epigenetic_factor_cond.cell_type_epigenetic_factor
     #set specify_genomic_window_cond = $input_type_cond.specify_genomic_window_cond
     #set specify_genomic_window = $specify_genomic_window_cond.specify_genomic_window
-    cp '$gen_prep_input_config' $prep_input_config &&
+    cp $gen_prep_input_config $prep_input_config &&
     prepMat
     $prep_input_config
     #if str($specify_genomic_window) == 'yes':
@@ -111,8 +111,8 @@
     ]]></command>
     <configfiles>
         <configfile name="gen_prep_input_config"><![CDATA[
-#if $input_type_cond == "datasets" and $input_type_cond['cell_type_epigenetic_factor_cond']['cell_type_epigenetic_factor'] == "manual":
-    #for $input_items in $input_type_cond['cell_type_epigenetic_factor_cond']['input_repeat']:
+#if str($input_type_cond) == "datasets" and str($input_type_cond.cell_type_epigenetic_factor_cond.cell_type_epigenetic_factor) == "manual":
+    #for $input_items in $input_type_cond.cell_type_epigenetic_factor_cond.input_repeat:
 ${input_items.cell_type_name} ${input_items.epigenetic_factor_name} ${input_items.input}
     #end for
 #end if]]></configfile>