# HG changeset patch
# User greg
# Date 1516378272 18000
# Node ID c5b77e9b36f1274a2b81491c602d77a52c3497a8
# Parent  7d33a8157c6ba7fb49e02454914cda288c760f68
Uploaded

diff -r 7d33a8157c6b -r c5b77e9b36f1 ideas.R
--- a/ideas.R	Thu Jan 18 13:47:50 2018 -0500
+++ b/ideas.R	Fri Jan 19 11:11:12 2018 -0500
@@ -353,7 +353,7 @@
         if (is.null(save_ideas_log)) {
             file.rename(default_log_name, output_log);
         }
-        quit(rc);
+        quit(save="no", status=rc);
     }
 }
 
@@ -381,7 +381,7 @@
             chrom = items[1];
             window_start = items[2];
             window_end = items[3];
-            output_name = paste(output_base_name,, chrom, sep=".");
+            output_name = paste(output_base_name, chrom, sep=".");
             cmd = paste(base_cmd, "-inv", window_start, window_end, sep=" ");
             cmd = paste(cmd, "-o", output_name, sep=" ");
             cmd = add_output_redirect(cmd, opt$save_ideas_log, opt$output_log, default_log_name);