# HG changeset patch
# User greg
# Date 1513792862 18000
# Node ID 8cfcf32c42820346a7c2114c6c6bfd9bc45a61d5
# Parent  a976dd6fcd1b1e2815ad1d821f3c516c761d9aee
Uploaded

diff -r a976dd6fcd1b -r 8cfcf32c4282 ideas.xml
--- a/ideas.xml	Wed Dec 20 11:24:23 2017 -0500
+++ b/ideas.xml	Wed Dec 20 13:01:02 2017 -0500
@@ -183,8 +183,9 @@
 && mv ./*.state '$output_txt_dir'
 #if str($output_heatmaps) == "yes":
     && Rscript '$__tool_directory__/create_heatmaps.R'
-    -i '$output_txt_dir'
-    -o '$output_pdf_dir'
+    --input_dir '$output_txt_dir'
+    --output_dir '$output_pdf_dir'
+    --script_dir '$__tool_directory__'
 #end if
     ]]></command>
     <configfiles>