# HG changeset patch
# User greg
# Date 1516891700 18000
# Node ID 473a089c5fb6c0fed388d59ccc3d18a5e4ff5aba
# Parent  445f67ea18f658c0cede11be1a33aad196818ce8
Uploaded

diff -r 445f67ea18f6 -r 473a089c5fb6 ideas.xml
--- a/ideas.xml	Thu Jan 25 09:43:42 2018 -0500
+++ b/ideas.xml	Thu Jan 25 09:48:20 2018 -0500
@@ -15,6 +15,16 @@
 #set output_training_dir = "output_training_dir"
 #set windows_positions_by_chroms_config = "windows_positions_by_chroms_config.txt"
 #set perform_training = $perform_training_cond.perform_training
+#if str($output_heatmaps) == "yes":
+    mkdir '$output_pdf_dir' &&
+#end if
+#if str($perform_training) == "yes":
+    #set output_dir = $output_training_dir
+    mkdir '$output_training_dir' &&
+#else:
+    #set output_dir = $output_txt_dir
+    mkdir '$output_txt_dir' &&
+#end if
 && Rscript '$__tool_directory__/ideas.R'
 --burnin_num $burnin_num
 #if str($bychr) == "true":