# HG changeset patch
# User greg
# Date 1503576346 14400
# Node ID 0f186cb552c8e184d2eda50b526495a27a89787e
# Parent  dc5d5a08c37023acdda7b15d73f94d3dc16a0b8b
Uploaded

diff -r dc5d5a08c370 -r 0f186cb552c8 ideas.xml
--- a/ideas.xml	Thu Aug 24 08:00:56 2017 -0400
+++ b/ideas.xml	Thu Aug 24 08:05:46 2017 -0400
@@ -15,12 +15,14 @@
 ## Create the config file and prepare the data
 ##############################################
 #set input_type = $input_type_cond.input_type
-cp '$prep_input_config' 'prep_input_config.txt' &&
-prepMat
-#if str($input_type) == 'datasets':
-    '$prep_input_config'
+#if str($input_type) == "datasets":
+    #set cell_type_epigenetic_factor_cond = $input_type_cond.cell_type_epigenetic_factor_cond
+    #set cell_type_epigenetic_factor = $cell_type_epigenetic_factor_cond.cell_type_epigenetic_factor
     #set specify_genomic_window_cond = $input_type_cond.specify_genomic_window_cond
     #set specify_genomic_window = $specify_genomic_window_cond.specify_genomic_window
+    cp '$gen_prep_input_config' "prep_input_config.txt" &&
+    prepMat
+    '$prep_input_config'
     #if str($specify_genomic_window) == 'yes':
         -bed '$specify_genomic_window_cond.bed_input'
     #else: