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diff ideas.xml @ 67:0f186cb552c8 draft

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Uploaded
author greg
date Thu, 24 Aug 2017 08:05:46 -0400
parents dc5d5a08c370
children 5fb237a06499
line wrap: on
line diff
--- a/ideas.xml	Thu Aug 24 08:00:56 2017 -0400
+++ b/ideas.xml	Thu Aug 24 08:05:46 2017 -0400
@@ -15,12 +15,14 @@
 ## Create the config file and prepare the data
 ##############################################
 #set input_type = $input_type_cond.input_type
-cp '$prep_input_config' 'prep_input_config.txt' &&
-prepMat
-#if str($input_type) == 'datasets':
-    '$prep_input_config'
+#if str($input_type) == "datasets":
+    #set cell_type_epigenetic_factor_cond = $input_type_cond.cell_type_epigenetic_factor_cond
+    #set cell_type_epigenetic_factor = $cell_type_epigenetic_factor_cond.cell_type_epigenetic_factor
     #set specify_genomic_window_cond = $input_type_cond.specify_genomic_window_cond
     #set specify_genomic_window = $specify_genomic_window_cond.specify_genomic_window
+    cp '$gen_prep_input_config' "prep_input_config.txt" &&
+    prepMat
+    '$prep_input_config'
     #if str($specify_genomic_window) == 'yes':
         -bed '$specify_genomic_window_cond.bed_input'
     #else: