comparison ideas.xml @ 126:dcc642e255ec draft

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author greg
date Tue, 21 Nov 2017 14:46:55 -0500
parents 5e545c9030a0
children de93d8e8a096
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125:5e545c9030a0 126:dcc642e255ec
57 ## generate a text file that categorizes the 57 ## generate a text file that categorizes the
58 ## window positions by chromosome to enable 58 ## window positions by chromosome to enable
59 ## the IDEAS -inv option. 59 ## the IDEAS -inv option.
60 ############################################## 60 ##############################################
61 #if str($specify_genomic_window) == "yes": 61 #if str($specify_genomic_window) == "yes":
62 && python '$__tool_directory__/create_window_positions_by_chrome.py' 62 && python '$__tool_directory__/create_window_positions_by_chrom.py'
63 --input '$specify_genomic_window_cond.bed_input' 63 --input '$specify_genomic_window_cond.bed_input'
64 --output $window_positions_by_chrom 64 --output $window_positions_by_chrom
65 #end if 65 #end if
66 ############################################## 66 ##############################################
67 ## Run IDEAS 67 ## Run IDEAS