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comparison ideas.xml @ 66:dc5d5a08c370 draft

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author greg
date Thu, 24 Aug 2017 08:00:56 -0400
parents e29e083ebef7
children 0f186cb552c8
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65:e29e083ebef7 66:dc5d5a08c370
7 <requirement type="package" version="332">ucsc-bigwigaverageoverbed</requirement> 7 <requirement type="package" version="332">ucsc-bigwigaverageoverbed</requirement>
8 <requirement type="package" version="1.2.0">ideas</requirement> 8 <requirement type="package" version="1.2.0">ideas</requirement>
9 <requirement type="package" version="1.3.2">r-optparse</requirement> 9 <requirement type="package" version="1.3.2">r-optparse</requirement>
10 </requirements> 10 </requirements>
11 <command detect_errors="exit_code"><![CDATA[ 11 <command detect_errors="exit_code"><![CDATA[
12 #import os 12 #set tmp_dir = "tmp"
13 #set tmp_dir = 'tmp' 13 #set prep_output_config = "prep_output_config.txt"
14 #set prep_output_config = 'prep_output_config.txt'
15 ##set ideas_input_dir = 'ideas_input'
16 ##set ideas_matrix_input_file = $os.path.join($ideas_input_dir, 'r_matrix.txt')
17 ##mkdir -p $ideas_input_dir &&
18 ############################################## 14 ##############################################
19 ## Create the config file and prepare the data 15 ## Create the config file and prepare the data
20 ############################################## 16 ##############################################
21 #set input_type = $input_type_cond.input_type 17 #set input_type = $input_type_cond.input_type
22 cp '$prep_input_config' 'prep_input_config.txt' && 18 cp '$prep_input_config' 'prep_input_config.txt' &&