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comparison ideas.xml @ 41:d899f8b65635 draft

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Uploaded
author greg
date Tue, 22 Aug 2017 13:37:56 -0400
parents 6787b3688ddd
children 46445e3dc9e2
comparison
equal deleted inserted replaced
40:6787b3688ddd 41:d899f8b65635
79 #end if 79 #end if
80 #set smoother_annotation = $smoother_annotation_cond.smoother_annotation 80 #set smoother_annotation = $smoother_annotation_cond.smoother_annotation
81 #if str($smoother_annotation) == 'yes': 81 #if str($smoother_annotation) == 'yes':
82 -hp 82 -hp
83 #end if 83 #end if
84 #if $log2_num > 0: 84 #if str($log2_num) != '0.0':
85 -log2 $log2_num 85 -log2 $log2_num
86 #end if 86 #end if
87 #if $max_states > 0: 87 #if str($max_states) != '0.0':
88 -G $max_states 88 -G $max_states
89 #end if 89 #end if
90 #if $initial_states > 0: 90 #if str($initial_states) != '0.0':
91 -C $initial_states 91 -C $initial_states
92 #end if 92 #end if
93 #if $max_position_classes > 0: 93 #if str($max_position_classes) != '0.0':
94 -P $max_position_classes 94 -P $max_position_classes
95 #end if 95 #end if
96 #if $max_cell_type_clusters > 0: 96 #if str($max_cell_type_clusters) != '0.0':
97 -K $max_cell_type_clusters 97 -K $max_cell_type_clusters
98 #end if 98 #end if
99 #if $prior_concentration > 0: 99 #if str($prior_concentration) != '0.0':
100 -A $prior_concentration 100 -A $prior_concentration
101 #end if 101 #end if
102 -sample $burnin_num $mcmc_num 102 -sample $burnin_num $mcmc_num
103 -minerr $min_standard_dev 103 -minerr $min_standard_dev
104 -maxerr $max_standard_dev 104 -maxerr $max_standard_dev