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comparison ideas.R @ 154:b140097a984e draft

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Uploaded
author greg
date Fri, 12 Jan 2018 13:43:16 -0500
parents 26c26cb32137
children 7d33a8157c6b
comparison
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153:1dc3ef0a6312 154:b140097a984e
15 make_option(c("--max_states"), action="store", dest="max_states", type="double", default=NULL, help="Maximum number of states to be inferred"), 15 make_option(c("--max_states"), action="store", dest="max_states", type="double", default=NULL, help="Maximum number of states to be inferred"),
16 make_option(c("--mcmc_num"), action="store", dest="mcmc_num", type="integer", help="Number of maximization steps"), 16 make_option(c("--mcmc_num"), action="store", dest="mcmc_num", type="integer", help="Number of maximization steps"),
17 make_option(c("--minerr"), action="store", dest="minerr", type="double", default=NULL, help="Minimum standard deviation for the emission Gaussian distribution"), 17 make_option(c("--minerr"), action="store", dest="minerr", type="double", default=NULL, help="Minimum standard deviation for the emission Gaussian distribution"),
18 make_option(c("--norm"), action="store_true", dest="norm", default=FALSE, help="Standardize all datasets"), 18 make_option(c("--norm"), action="store_true", dest="norm", default=FALSE, help="Standardize all datasets"),
19 make_option(c("--output_log"), action="store", dest="output_log", default=NULL, help="Output log file path"), 19 make_option(c("--output_log"), action="store", dest="output_log", default=NULL, help="Output log file path"),
20 make_option(c("--output_txt_dir"), action="store", dest="output_txt_dir", help="Directory for output txt files"),
21 make_option(c("--prep_output_config"), action="store", dest="prep_output_config", help="prepMat output config file"), 20 make_option(c("--prep_output_config"), action="store", dest="prep_output_config", help="prepMat output config file"),
22 make_option(c("--prior_concentration"), action="store", dest="prior_concentration", type="double", default=NULL, help="Prior concentration"), 21 make_option(c("--prior_concentration"), action="store", dest="prior_concentration", type="double", default=NULL, help="Prior concentration"),
23 make_option(c("--project_name"), action="store", dest="project_name", help="Outputs will have this base name"), 22 make_option(c("--project_name"), action="store", dest="project_name", help="Outputs will have this base name"),
24 make_option(c("--rseed"), action="store", dest="rseed", type="integer", help="Seed for IDEAS model initialization"), 23 make_option(c("--rseed"), action="store", dest="rseed", type="integer", help="Seed for IDEAS model initialization"),
25 make_option(c("--save_ideas_log"), action="store", dest="save_ideas_log", default=NULL, help="Flag to save IDEAS process log"), 24 make_option(c("--save_ideas_log"), action="store", dest="save_ideas_log", default=NULL, help="Flag to save IDEAS process log"),