Mercurial > repos > greg > ideas

comparison ideas.xml @ 151:9d34f7e6d80c draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author greg
date Fri, 12 Jan 2018 11:53:17 -0500
parents a80b76535243
children 1dc3ef0a6312
comparison
equal deleted inserted replaced
150:3762c27d820a 151:9d34f7e6d80c
4 <requirement type="package" version="2.26.0">bedtools</requirement> 4 <requirement type="package" version="2.26.0">bedtools</requirement>
5 <requirement type="package" version="332">ucsc-bedgraphtobigwig</requirement> 5 <requirement type="package" version="332">ucsc-bedgraphtobigwig</requirement>
6 <requirement type="package" version="332">ucsc-bedsort</requirement> 6 <requirement type="package" version="332">ucsc-bedsort</requirement>
7 <requirement type="package" version="332">ucsc-bigwigaverageoverbed</requirement> 7 <requirement type="package" version="332">ucsc-bigwigaverageoverbed</requirement>
8 <requirement type="package" version="1.20">ideas</requirement> 8 <requirement type="package" version="1.20">ideas</requirement>
9 <requirement type="package" version="1.10.4">r-data.table</requirement>
9 <requirement type="package" version="1.4.4">r-optparse</requirement> 10 <requirement type="package" version="1.4.4">r-optparse</requirement>
10 </requirements> 11 </requirements>
11 <command detect_errors="exit_code"><![CDATA[ 12 <command detect_errors="exit_code"><![CDATA[
12 #set output_pdf_dir = "output_pdf_dir" 13 #set output_pdf_dir = "output_pdf_dir"
13 #set output_txt_dir = "output_txt_dir" 14 #set output_txt_dir = "output_txt_dir"
120 --maxerr $maxerr 121 --maxerr $maxerr
121 #end if 122 #end if
122 --rseed $rseed 123 --rseed $rseed
123 --thread \${GALAXY_SLOTS:-4} 124 --thread \${GALAXY_SLOTS:-4}
124 --project_name '$project_name.$chrom' 125 --project_name '$project_name.$chrom'
125 --save_ideas_log $save_ideas_log
126 #if str($save_ideas_log) == "yes": 126 #if str($save_ideas_log) == "yes":
127 --save_ideas_log $save_ideas_log
127 --output_log '$output_log' 128 --output_log '$output_log'
128 #end if 129 #end if
129 #end for 130 #end for
130 #else: 131 #else:
131 ############################################## 132 ##############################################
166 --maxerr $maxerr 167 --maxerr $maxerr
167 #end if 168 #end if
168 --rseed $rseed 169 --rseed $rseed
169 --thread \${GALAXY_SLOTS:-4} 170 --thread \${GALAXY_SLOTS:-4}
170 --project_name '$project_name' 171 --project_name '$project_name'
171 --save_ideas_log $save_ideas_log
172 #if str($save_ideas_log) == "yes": 172 #if str($save_ideas_log) == "yes":
173 --save_ideas_log $save_ideas_log
173 --output_log '$output_log' 174 --output_log '$output_log'
174 #end if 175 #end if
175 #end if 176 #end if
176 && mv ./*.cluster '$output_txt_dir' 177 && mv ./*.cluster '$output_txt_dir'
177 && mv ./*.para '$output_txt_dir' 178 && mv ./*.para '$output_txt_dir'