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comparison ideas.xml @ 37:9298fd6e7443 draft

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Uploaded
author greg
date Tue, 22 Aug 2017 11:31:14 -0400
parents 859687afe7bc
children 3421fff414de
comparison
equal deleted inserted replaced
36:859687afe7bc 37:9298fd6e7443
102 -sample $burnin_num $mcmc_num 102 -sample $burnin_num $mcmc_num
103 -minerr $min_standard_dev 103 -minerr $min_standard_dev
104 -maxerr $max_standard_dev 104 -maxerr $max_standard_dev
105 -thread \${GALAXY_SLOTS:-4} 105 -thread \${GALAXY_SLOTS:-4}
106 > $output_log 106 > $output_log
107 && if [ -f *.cluster ] ; then mv *.cluster $output_cluster 107 && for file in ./*.cluster
108 && if [ -f *.para ] ; then mv *.para $output_para 108 do
109 && if [ -f *.profile ] ; then mv *.profile $output_profile 109 if [ -f "${file}" ]; then
110 && if [ -f *.state ] ; then mv *.state $output_state 110 mv "${file}" $output_cluster;
111 break
112 fi
113 done
114 && for file in ./*.para
115 do
116 if [ -f "${file}" ]; then
117 mv "${file}" $output_para;
118 break
119 fi
120 done
121 && for file in ./*.profile
122 do
123 if [ -f "${file}" ]; then
124 mv "${file}" $output_profile;
125 break
126 fi
127 done
128 && for file in ./*.state
129 do
130 if [ -f "${file}" ]; then
131 mv "${file}" $output_state;
132 break
133 fi
134 done
111 ]]></command> 135 ]]></command>
112 <configfiles> 136 <configfiles>
113 <configfile name="prep_input_config"><![CDATA[#for $input_items in $input_type_cond.input_repeat: 137 <configfile name="prep_input_config"><![CDATA[#for $input_items in $input_type_cond.input_repeat:
114 ${input_items.cell_type_name} ${input_items.epigenetic_factor_name} ${input_items.input} 138 ${input_items.cell_type_name} ${input_items.epigenetic_factor_name} ${input_items.input}
115 #end for ]]></configfile> 139 #end for ]]></configfile>