Mercurial > repos > greg > ideas
comparison ideas.xml @ 43:9264225d796d draft
Uploaded
| author | greg |
|---|---|
| date | Tue, 22 Aug 2017 14:24:34 -0400 |
| parents | 46445e3dc9e2 |
| children | 8e449b51b581 |
comparison
equal
deleted
inserted
replaced
| 42:46445e3dc9e2 | 43:9264225d796d |
|---|---|
| 200 <param name="max_cell_type_clusters" type="integer" value="0" min="0" label="Maximum number of cell type clusters allowed" help="Zero value has no affect"/> | 200 <param name="max_cell_type_clusters" type="integer" value="0" min="0" label="Maximum number of cell type clusters allowed" help="Zero value has no affect"/> |
| 201 <param name="prior_concentration" type="float" value="1" min="0" label="Prior concentration" help="Zero value results in the default value: sqrt(number of cell types)"/> | 201 <param name="prior_concentration" type="float" value="1" min="0" label="Prior concentration" help="Zero value results in the default value: sqrt(number of cell types)"/> |
| 202 <param name="burnin_num" type="integer" value="20" min="1" label="Number of burnin steps"/> | 202 <param name="burnin_num" type="integer" value="20" min="1" label="Number of burnin steps"/> |
| 203 <param name="mcmc_num" type="integer" value="20" min="1" label="Number of maximization steps"/> | 203 <param name="mcmc_num" type="integer" value="20" min="1" label="Number of maximization steps"/> |
| 204 <param name="min_standard_dev" type="float" value="0.5" min="0" label="Minimum standard deviation for the emission Gaussian distribution" help="Zero value results in the default value: 0.5"/> | 204 <param name="min_standard_dev" type="float" value="0.5" min="0" label="Minimum standard deviation for the emission Gaussian distribution" help="Zero value results in the default value: 0.5"/> |
| 205 <param name="max_standard_dev" type="float" value="0" min="0" label="Maximum standard deviation for the emission Gaussian distribution" help="Zero value results in the default value: infinity"/> | 205 <param name="max_standard_dev" type="float" value="1000000" min="0" label="Maximum standard deviation for the emission Gaussian distribution" help="Zero value results in the default value: 1000000"/> |
| 206 </inputs> | 206 </inputs> |
| 207 <outputs> | 207 <outputs> |
| 208 <data name="output_log" format="txt" label="${tool.name} (ideas output log) on ${on_string}"/> | 208 <data name="output_log" format="txt" label="${tool.name} (ideas output log) on ${on_string}"/> |
| 209 <data name="output_cluster" format="txt" label="${tool.name} (local cell type clustering) on ${on_string}"/> | 209 <data name="output_cluster" format="txt" label="${tool.name} (local cell type clustering) on ${on_string}"/> |
| 210 <data name="output_para" format="tabular" label="${tool.name} (epigenetic state frequency, mean and variance parameters) on ${on_string}"/> | 210 <data name="output_para" format="tabular" label="${tool.name} (epigenetic state frequency, mean and variance parameters) on ${on_string}"/> |