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comparison ideas.xml @ 28:91dc2a532890 draft

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Uploaded
author greg
date Mon, 14 Aug 2017 09:06:15 -0400
parents 0cf199863400
children 06522a4aae6d
comparison
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27:0cf199863400 28:91dc2a532890
122 #set set_max_standard_dev = $set_max_standard_dev_cond.set_max_standard_dev 122 #set set_max_standard_dev = $set_max_standard_dev_cond.set_max_standard_dev
123 #if str($set_max_standard_dev) == 'yes': 123 #if str($set_max_standard_dev) == 'yes':
124 -maxerr $set_max_standard_dev_cond.max_standard_dev 124 -maxerr $set_max_standard_dev_cond.max_standard_dev
125 #end if 125 #end if
126 -thread \${GALAXY_SLOTS:-4} 126 -thread \${GALAXY_SLOTS:-4}
127 > $output_log
127 && mv *.cluster $output_cluster 128 && mv *.cluster $output_cluster
128 && mv *.para $output_para 129 && mv *.para $output_para
129 && mv *.profile $output_profile 130 && mv *.profile $output_profile
130 && mv *.state $output_state 131 && mv *.state $output_state
131 ]]></command> 132 ]]></command>
285 <param name="max_standard_dev" type="float" value="100000000" label="Maximum standard deviation for the emission Gaussian distribution"/> 286 <param name="max_standard_dev" type="float" value="100000000" label="Maximum standard deviation for the emission Gaussian distribution"/>
286 </when> 287 </when>
287 </conditional> 288 </conditional>
288 </inputs> 289 </inputs>
289 <outputs> 290 <outputs>
291 <data name="output_log" format="txt" label="${tool.name} (ideas output log) on ${on_string}"/>
290 <data name="output_cluster" format="txt" label="${tool.name} (local cell type clustering) on ${on_string}"/> 292 <data name="output_cluster" format="txt" label="${tool.name} (local cell type clustering) on ${on_string}"/>
291 <data name="output_para" format="tabular" label="${tool.name} (epigenetic state frequency, mean and variance parameters) on ${on_string}"/> 293 <data name="output_para" format="tabular" label="${tool.name} (epigenetic state frequency, mean and variance parameters) on ${on_string}"/>
292 <data name="output_profile" format="txt" label="${tool.name} (profile) on ${on_string}"/> 294 <data name="output_profile" format="txt" label="${tool.name} (profile) on ${on_string}"/>
293 <data name="output_state" format="txt" label="${tool.name} (epigenetic states and position classes) on ${on_string}"/> 295 <data name="output_state" format="txt" label="${tool.name} (epigenetic states and position classes) on ${on_string}"/>
294 </outputs> 296 </outputs>