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comparison ideas.xml @ 142:8cfcf32c4282 draft

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Uploaded
author greg
date Wed, 20 Dec 2017 13:01:02 -0500
parents a976dd6fcd1b
children a80b76535243
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141:a976dd6fcd1b 142:8cfcf32c4282
181 && mv ./*.para '$output_txt_dir' 181 && mv ./*.para '$output_txt_dir'
182 && mv ./*.profile '$output_txt_dir' 182 && mv ./*.profile '$output_txt_dir'
183 && mv ./*.state '$output_txt_dir' 183 && mv ./*.state '$output_txt_dir'
184 #if str($output_heatmaps) == "yes": 184 #if str($output_heatmaps) == "yes":
185 && Rscript '$__tool_directory__/create_heatmaps.R' 185 && Rscript '$__tool_directory__/create_heatmaps.R'
186 -i '$output_txt_dir' 186 --input_dir '$output_txt_dir'
187 -o '$output_pdf_dir' 187 --output_dir '$output_pdf_dir'
188 --script_dir '$__tool_directory__'
188 #end if 189 #end if
189 ]]></command> 190 ]]></command>
190 <configfiles> 191 <configfiles>
191 <configfile name="gen_prep_input_config"><![CDATA[#if str($cell_type_epigenetic_factor_cond.cell_type_epigenetic_factor) == "extract": 192 <configfile name="gen_prep_input_config"><![CDATA[#if str($cell_type_epigenetic_factor_cond.cell_type_epigenetic_factor) == "extract":
192 #set input_name_positions = $cell_type_epigenetic_factor_cond.input_name_positions 193 #set input_name_positions = $cell_type_epigenetic_factor_cond.input_name_positions